Directed evolution of ligand dependence: small-molecule-activated protein splicing

Proc Natl Acad Sci U S A. 2004 Jul 20;101(29):10505-10. doi: 10.1073/pnas.0402762101. Epub 2004 Jul 9.

Abstract

Artificial molecular switches that modulate protein activities in response to synthetic small molecules would serve as tools for exerting temporal and dose-dependent control over protein function. Self-splicing protein elements (inteins) are attractive starting points for the creation of such switches, because their insertion into a protein blocks the target protein's function until splicing occurs. Natural inteins, however, are not known to be regulated by small molecules. We evolved an intein-based molecular switch that transduces binding of a small molecule into the activation of an arbitrary protein of interest. Simple insertion of a natural ligand-binding domain into a minimal intein destroys splicing activity. To restore activity in a ligand-dependent manner, we linked protein splicing to cell survival or fluorescence in Saccharomyces cerevisiae. Iterated cycles of mutagenesis and selection yielded inteins with strong splicing activities that highly depend on 4-hydroxytamoxifen. Insertion of an evolved intein into four unrelated proteins in living cells revealed that ligand-dependent activation of protein function is general, fairly rapid, dose-dependent, and posttranslational. Our directed-evolution approach therefore evolved small-molecule dependence in a protein and also created a general tool for modulating the function of arbitrary proteins in living cells with a single cell-permeable, synthetic small molecule.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amebicides / pharmacology
  • Directed Molecular Evolution*
  • Estrogen Antagonists / pharmacology
  • Gentamicins / pharmacology
  • Ligands
  • Models, Molecular
  • Protein Splicing*
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Saccharomyces cerevisiae / cytology
  • Saccharomyces cerevisiae / drug effects
  • Saccharomyces cerevisiae / physiology
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Tamoxifen / analogs & derivatives*
  • Tamoxifen / pharmacology

Substances

  • Amebicides
  • Estrogen Antagonists
  • Gentamicins
  • Ligands
  • Recombinant Fusion Proteins
  • Saccharomyces cerevisiae Proteins
  • Tamoxifen
  • afimoxifene
  • antibiotic G 418