Electron crystallography reveals the structure of metarhodopsin I

EMBO J. 2004 Sep 15;23(18):3609-20. doi: 10.1038/sj.emboj.7600374. Epub 2004 Aug 26.

Abstract

Rhodopsin is the prototypical G protein-coupled receptor, responsible for detection of dim light in vision. Upon absorption of a photon, rhodopsin undergoes structural changes, characterised by distinct photointermediates. Currently, only the ground-state structure has been described. We have determined a density map of a photostationary state highly enriched in metarhodopsin I, to a resolution of 5.5 A in the membrane plane, by electron crystallography. The map shows density for helix 8, the cytoplasmic loops, the extracellular plug, all tryptophan residues, an ordered cholesterol molecule and the beta-ionone ring. Comparison of this map with X-ray structures of the ground state reveals that metarhodopsin I formation does not involve large rigid-body movements of helices, but there is a rearrangement close to the bend of helix 6, at the level of the retinal chromophore. There is no gradual build-up of the large conformational change known to accompany metarhodopsin II formation. The protein remains in a conformation similar to that of the ground state until late in the photobleaching process.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Models, Molecular
  • Protein Conformation*
  • Rhodopsin / chemistry*
  • Rod Cell Outer Segment / chemistry

Substances

  • metarhodopsins
  • Rhodopsin

Associated data

  • PDB/1GZM