Detecting single stranded DNA with a solid state nanopore

Nano Lett. 2005 Oct;5(10):1905-9. doi: 10.1021/nl051199m.

Abstract

Voltage biased solid-state nanopores are used to detect and characterize individual single stranded DNA molecules of fixed micrometer length by operating a nanopore detector at pH values greater than approximately 11.6. The distribution of observed molecular event durations and blockade currents shows that a significant fraction of the events obey a rule of constant event charge deficit (ecd) indicating that they correspond to molecules translocating through the nanopore in a distribution of folded and unfolded configurations. A surprisingly large component is unfolded. The result is an important milestone in developing solid-state nanopores for single molecule sequencing applications.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA, Single-Stranded / analysis*
  • Electrochemistry / methods*
  • Nanotechnology / methods*
  • Nucleic Acid Conformation

Substances

  • DNA, Single-Stranded