Crystal structure of the oligomerization domain of the phosphoprotein of vesicular stomatitis virus

J Virol. 2006 Mar;80(6):2808-14. doi: 10.1128/JVI.80.6.2808-2814.2006.

Abstract

In the replication cycle of nonsegmented negative-strand RNA viruses, the viral RNA-dependent RNA polymerase (L) recognizes a nucleoprotein (N)-enwrapped RNA template during the RNA polymerase reaction. The viral phosphoprotein (P) is a polymerase cofactor essential for this recognition. We report here the 2.3-angstroms-resolution crystal structure of the central domain (residues 107 to 177) of P from vesicular stomatitis virus. The fold of this domain consists of a beta hairpin, an alpha helix, and another beta hairpin. The alpha helix provides the stabilizing force for forming a homodimer, while the two beta hairpins add additional stabilization by forming a four-stranded beta sheet through domain swapping between two molecules. This central dimer positions the N- and C-terminal domains of P to interact with the N and L proteins, allowing the L protein to specifically recognize the nucleocapsid-RNA template and to progress along the template while concomitantly assembling N with nascent RNA. The interdimer interactions observed in the noncrystallographic packing may offer insight into the mechanism of the RNA polymerase processive reaction along the viral nucleocapsid-RNA template.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Crystallization
  • Dimerization
  • Models, Molecular
  • Molecular Sequence Data
  • Phosphoproteins / chemistry*
  • Phosphoproteins / genetics
  • Phosphoproteins / metabolism
  • Phosphoproteins / ultrastructure*
  • Vesicular stomatitis Indiana virus / chemistry
  • Vesicular stomatitis Indiana virus / metabolism*
  • Viral Structural Proteins / chemistry*
  • Viral Structural Proteins / genetics
  • Viral Structural Proteins / metabolism
  • Viral Structural Proteins / ultrastructure*

Substances

  • P protein, Vesicular stomatitis virus
  • Phosphoproteins
  • Viral Structural Proteins