Targeting retroviral Zn finger-DNA interactions: a small-molecule approach using the electrophilic nature of trans-platinum-nucleobase compounds

Chem Biol. 2006 May;13(5):539-48. doi: 10.1016/j.chembiol.2006.04.004.

Abstract

Noncovalent interactions are ubiquitous in ternary systems involving metal ions, DNA/RNA, and proteins and represent a structural motif for design of selective inhibitors of biological function. This contribution shows that small molecules containing platinated purine nucleobases mimic the natural DNA(RNA)-tryptophan recognition interaction of zinc finger peptides, specifically the C-terminal finger of HIV NCp7 protein. Interaction with platinum results in Zn ejection from the peptide accompanied by loss of tertiary structure. Targeting the NCp7-DNA interaction for drug design represents a conceptual advance over electrophiles designed for chemical attack on the zinc finger alone. These results demonstrate examples of a new platinum structural class targeting specific biological processes, distinct from the bifunctional DNA-DNA binding of cytotoxic agents like cisplatin. The results confirm the validity of a chemical biological approach for metallodrug design for selective ternary DNA(RNA)-protein interactions.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Capsid Proteins / metabolism
  • DNA / metabolism*
  • Drug Design
  • Gene Products, gag / metabolism
  • Nuclear Magnetic Resonance, Biomolecular
  • Platinum / metabolism
  • Protein Binding
  • Spectrometry, Fluorescence
  • Spectrometry, Mass, Electrospray Ionization
  • Viral Proteins / metabolism
  • Zinc Fingers*
  • gag Gene Products, Human Immunodeficiency Virus

Substances

  • Capsid Proteins
  • Gene Products, gag
  • NCP7 protein, Human immunodeficiency virus 1
  • Viral Proteins
  • gag Gene Products, Human Immunodeficiency Virus
  • Platinum
  • DNA