Structural basis for ribosome recruitment and manipulation by a viral IRES RNA

Science. 2006 Dec 1;314(5804):1450-4. doi: 10.1126/science.1133281. Epub 2006 Nov 23.

Abstract

Canonical cap-dependent translation initiation requires a large number of protein factors that act in a stepwise assembly process. In contrast, internal ribosomal entry sites (IRESs) are cis-acting RNAs that in some cases completely supplant these factors by recruiting and activating the ribosome using a single structured RNA. Here we present the crystal structures of the ribosome-binding domain from a Dicistroviridae intergenic region IRES at 3.1 angstrom resolution, providing a view of the prefolded architecture of an all-RNA translation initiation apparatus. Docking of the structure into cryo-electron microscopy reconstructions of an IRES-ribosome complex suggests a model for ribosome manipulation by a dynamic IRES RNA.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cryoelectron Microscopy
  • Crystallization
  • Crystallography, X-Ray
  • Models, Molecular
  • Mutation
  • Nucleic Acid Conformation
  • Protein Biosynthesis*
  • RNA Viruses / genetics*
  • RNA, Viral / chemistry*
  • RNA, Viral / genetics
  • RNA, Viral / metabolism
  • Regulatory Sequences, Ribonucleic Acid* / genetics
  • Ribosomes / metabolism*

Substances

  • RNA, Viral
  • Regulatory Sequences, Ribonucleic Acid

Associated data

  • PDB/2IL9