Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway

Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10631-6. doi: 10.1073/pnas.0702791104. Epub 2007 Jun 4.

Abstract

Fifty years ago, Kornberg and Krebs established the glyoxylate cycle as the pathway for the synthesis of cell constituents from C2-units. However, since then, many bacteria have been described that do not contain isocitrate lyase, the key enzyme of this pathway. Here, a pathway termed the ethylmalonyl-CoA pathway operating in such organisms is described. Isotopically labeled acetate and bicarbonate were transformed to ethylmalonyl-CoA by cell extracts of acetate-grown, isocitrate lyase-negative Rhodobacter sphaeroides as determined by NMR spectroscopy. Crotonyl-CoA carboxylase/reductase, catalyzing crotonyl-CoA + CO2 + NADPH --> ethylmalonyl-CoA- + NADP+ was identified as the key enzyme of the ethylmalonyl-CoA pathway. The reductive carboxylation of an enoyl-thioester is a unique biochemical reaction, unprecedented in biology. The enzyme from R. sphaeroides was heterologously produced in Escherichia coli and characterized. Crotonyl-CoA carboxylase/reductase (or its gene) can be used as a marker for the presence of the ethylmalonyl-CoA pathway, which functions not only in acetyl-CoA assimilation. In Streptomyces sp., it may also supply precursors (ethylmalonyl-CoA) for antibiotic biosynthesis. For methylotrophic bacteria such as Methylobacterium extorquens, extension of the serine cycle with reactions of the ethylmalonyl-CoA pathway leads to a simplified scheme for isocitrate lyase-independent C1 assimilation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acyl Coenzyme A / metabolism*
  • Anti-Bacterial Agents / biosynthesis
  • Carboxy-Lyases / metabolism*
  • Chromatography, Affinity
  • Chromatography, DEAE-Cellulose
  • Chromatography, High Pressure Liquid
  • Dicarboxylic Acids / chemistry
  • Dicarboxylic Acids / metabolism*
  • Electrophoresis, Polyacrylamide Gel
  • Methylobacterium extorquens / enzymology
  • Models, Biological
  • Nuclear Magnetic Resonance, Biomolecular
  • Oxidoreductases / metabolism*
  • Rhodobacter sphaeroides / enzymology
  • Streptomyces / metabolism

Substances

  • Acyl Coenzyme A
  • Anti-Bacterial Agents
  • Dicarboxylic Acids
  • ethylmalonyl-coenzyme A
  • crotonyl-coenzyme A
  • Oxidoreductases
  • Carboxy-Lyases