The processing of double-strand breaks and binding of single-strand-binding proteins RPA and Rad51 modulate the formation of ATR-kinase foci in yeast

J Cell Sci. 2007 Dec 1;120(Pt 23):4209-20. doi: 10.1242/jcs.018366. Epub 2007 Nov 14.

Abstract

Double-strand breaks (DSB) in yeast lead to the formation of repair foci and induce a checkpoint response that requires both the ATR-related kinase Mec1 and its target, Rad53. By combining high-resolution confocal microscopy and chromatin-immunoprecipitation assays, we analysed the genetic requirements for and the kinetics of Mec1 recruitment to an irreparable HO-endonuclease-induced DSB. Coincident with the formation of a 3' overhang, the Mec1-Ddc2 (Lcd1) complex is recruited into a single focus that colocalises with the DSB site and precipitates with single-strand DNA (ssDNA). The absence of Rad24 impaired cut-site resection, Mec1 recruitment and focus formation, whereas, in the absence of yKu70, both ssDNA accumulation and Mec1 recruitment was accelerated. By contrast, mutation of the N-terminus of the large RPA subunit blocked Mec1 focus formation without affecting DSB processing, arguing for a direct involvement of RPA in Mec1-Ddc2 recruitment. Conversely, loss of Rad51 enhanced Mec1 focus formation independently of ssDNA formation, suggesting that Rad51 might compete for the interaction of RPA with Mec1-Ddc2. In all cases, Mec1 focus formation correlated with checkpoint activation. These observations led to a model that links end-processing and competition between different ssDNA-binding factors with Mec1-Ddc2 focus formation and checkpoint activation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing
  • Cell Cycle Proteins / metabolism
  • Chromatin Immunoprecipitation
  • DNA Damage
  • DNA Repair*
  • DNA, Fungal / genetics
  • DNA, Fungal / metabolism
  • Intracellular Signaling Peptides and Proteins
  • Kinetics
  • Models, Biological
  • Phosphoproteins / metabolism
  • Protein Binding
  • Protein Serine-Threonine Kinases / metabolism*
  • Rad51 Recombinase / metabolism*
  • Recombination, Genetic
  • Replication Protein A / metabolism*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / metabolism

Substances

  • Adaptor Proteins, Signal Transducing
  • Cell Cycle Proteins
  • DNA, Fungal
  • Intracellular Signaling Peptides and Proteins
  • LCD1 protein, S cerevisiae
  • Phosphoproteins
  • Replication Protein A
  • Saccharomyces cerevisiae Proteins
  • MEC1 protein, S cerevisiae
  • Protein Serine-Threonine Kinases
  • Rad51 Recombinase