We report the electric conductivity of three-dimensional (3D) nanoporous gold at low temperatures and in strong magnetic fields. It was found that topologically disordered 3D nanoporosity leads to extremely low magnetoresistance and anomalous temperature dependence as the characteristic length of nanoporous gold is tuned to be approximately 14 nm. This study underscores the importance of 3D topology of a nanostructure on electronic transport properties and has implications in manipulating electron transport by tailoring 3D nanostructures.