Cryptic diversity in flathead fishes (Scorpaeniformes: Platycephalidae) across the Indo-West Pacific uncovered by DNA barcoding

Mol Ecol Resour. 2013 Jan;13(1):32-42. doi: 10.1111/1755-0998.12022. Epub 2012 Sep 25.

Abstract

Identification of taxonomical units underpins most biological endeavours ranging from accurate biodiversity estimates to the effective management of sustainably harvested, protected or endangered species. Successful species identification is now frequently based on a combination of approaches including morphometrics and DNA markers. Sequencing of the mitochondrial COI gene is an established methodology with an international campaign directed at barcoding all fishes. We employed COI sequencing alongside traditional taxonomic identification methods and uncovered instances of deep intraspecific genetic divergences among flathead species. Sixty-five operational taxonomic units (OTUs) were observed across the Indo-West Pacific from just 48 currently recognized species. The most comprehensively sampled taxon, Platycephalus indicus, exhibited the highest levels of genetic diversity with eight lineages separated by up to 16.37% genetic distance. Our results clearly indicate a thorough reappraisal of the current taxonomy of P. indicus (and its three junior synonyms) is warranted in conjunction with detailed taxonomic work on the other additional Platycephalidae OTUs detected by DNA barcoding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cluster Analysis
  • Computational Biology
  • Conservation of Natural Resources / methods
  • DNA Barcoding, Taxonomic / methods*
  • Electron Transport Complex IV / genetics
  • Fishes / genetics*
  • Genetic Variation / genetics*
  • Indian Ocean
  • Molecular Sequence Data
  • Pacific Ocean
  • Phylogeny*
  • Sequence Analysis, DNA
  • Species Specificity

Substances

  • Electron Transport Complex IV

Associated data

  • GENBANK/JX488139
  • GENBANK/JX488140
  • GENBANK/JX488141
  • GENBANK/JX488142
  • GENBANK/JX488143
  • GENBANK/JX488144
  • GENBANK/JX488145
  • GENBANK/JX488146
  • GENBANK/JX488147
  • GENBANK/JX488148
  • GENBANK/JX488149
  • GENBANK/JX488150
  • GENBANK/JX488151
  • GENBANK/JX488152
  • GENBANK/JX488153
  • GENBANK/JX488154
  • GENBANK/JX488155
  • GENBANK/JX488156
  • GENBANK/JX488157
  • GENBANK/JX488158
  • GENBANK/JX488159
  • GENBANK/JX488160
  • GENBANK/JX488161
  • GENBANK/JX488162
  • GENBANK/JX488163
  • GENBANK/JX488164
  • GENBANK/JX488165
  • GENBANK/JX488166
  • GENBANK/JX488167
  • GENBANK/JX488168
  • GENBANK/JX488169
  • GENBANK/JX488170
  • GENBANK/JX488171
  • GENBANK/JX488172
  • GENBANK/JX488173
  • GENBANK/JX488174
  • GENBANK/JX488175
  • GENBANK/JX488176
  • GENBANK/JX488177
  • GENBANK/JX488178
  • GENBANK/JX488179
  • GENBANK/JX488180
  • GENBANK/JX488181
  • GENBANK/JX488182
  • GENBANK/JX488183
  • GENBANK/JX488184
  • GENBANK/JX488185
  • GENBANK/JX488186
  • GENBANK/JX488187
  • GENBANK/JX488188
  • GENBANK/JX488189
  • GENBANK/JX488190
  • GENBANK/JX488191
  • GENBANK/JX488192
  • GENBANK/JX488193
  • GENBANK/JX488194
  • GENBANK/JX488195
  • GENBANK/JX488196
  • GENBANK/JX488197
  • GENBANK/JX488198
  • GENBANK/JX488199
  • GENBANK/JX488200
  • GENBANK/JX488201
  • GENBANK/JX488202
  • GENBANK/JX488203
  • GENBANK/JX488204
  • GENBANK/JX488205
  • GENBANK/JX488206
  • GENBANK/JX488207
  • GENBANK/JX488208
  • GENBANK/JX488209
  • GENBANK/JX488210
  • GENBANK/JX488211
  • GENBANK/JX488212
  • GENBANK/JX488213
  • GENBANK/JX488214
  • GENBANK/JX488215
  • GENBANK/JX488216
  • GENBANK/JX488217
  • GENBANK/JX488218
  • GENBANK/JX488219
  • GENBANK/JX488220
  • GENBANK/JX488221
  • GENBANK/JX488222
  • GENBANK/JX488223
  • GENBANK/JX488224
  • GENBANK/JX488225
  • GENBANK/JX488226
  • GENBANK/JX488227
  • GENBANK/JX488228
  • GENBANK/JX488229
  • GENBANK/JX488230
  • GENBANK/JX488231
  • GENBANK/JX488232
  • GENBANK/JX488233
  • GENBANK/JX488234
  • GENBANK/JX488235
  • GENBANK/JX488236
  • GENBANK/JX488237
  • GENBANK/JX488238
  • GENBANK/JX488239
  • GENBANK/JX488240
  • GENBANK/JX488241
  • GENBANK/JX488242
  • GENBANK/JX488243
  • GENBANK/JX488244
  • GENBANK/JX488245
  • GENBANK/JX488246
  • GENBANK/JX488247
  • GENBANK/JX488248
  • GENBANK/JX488249
  • GENBANK/JX488250
  • GENBANK/JX488251
  • GENBANK/JX488252
  • GENBANK/JX488253
  • GENBANK/JX488254
  • GENBANK/JX488255
  • GENBANK/JX488256
  • GENBANK/JX488257
  • GENBANK/JX488258
  • GENBANK/JX488259
  • GENBANK/JX488260
  • GENBANK/JX488261
  • GENBANK/JX488262
  • GENBANK/JX488263
  • GENBANK/JX488264
  • GENBANK/JX488265
  • GENBANK/JX488266
  • GENBANK/JX488267
  • GENBANK/JX488268
  • GENBANK/JX488269
  • GENBANK/JX488270
  • GENBANK/JX488271
  • GENBANK/JX488272
  • GENBANK/JX488273
  • GENBANK/JX488274
  • GENBANK/JX488275
  • GENBANK/JX488276
  • GENBANK/JX488277
  • GENBANK/JX488278
  • GENBANK/JX488279
  • GENBANK/JX488280
  • GENBANK/JX488281
  • GENBANK/JX488282
  • GENBANK/JX488283
  • GENBANK/JX488284
  • GENBANK/JX488285
  • GENBANK/JX488286
  • GENBANK/JX488287
  • GENBANK/JX488288
  • GENBANK/JX488289
  • GENBANK/JX488290
  • GENBANK/JX488291