Affinities of recombinant norovirus P dimers for human blood group antigens

Glycobiology. 2013 Mar;23(3):276-85. doi: 10.1093/glycob/cws141. Epub 2012 Oct 30.

Abstract

Noroviruses (NoVs), the major cause of viral acute gastroenteritis, recognize histo-blood group antigens (HBGAs) as receptors or attachment factors. To gain a deeper understanding of the interplay between NoVs and their hosts, the affinities of recombinant P dimers (P₂'s) of a GII.4 NoV (VA387) to a library of 41 soluble analogs of HBGAs were measured using the direct electrospray ionization mass spectrometry assay. The HBGAs contained the A, B, H and Lewis epitopes, with variable sizes (2-6 residues) and different types (1-6). The results reveal that the P₂'s exhibit a broad specificity for the HBGAs and bind to all of the oligosaccharides tested. Overall, the affinities are relatively low, ranging from 400 to 3000 M⁻¹ and are influenced by the chain type: 3 > 1 ≈ 2 ≈ 4 ≈ 5 ≈ 6 for H antigens; 6 > 1 ≈ 3 ≈ 4 ≈ 5 > 2 for A antigens; 3 > 1 ≈ 4 ≈ 5 ≈ 6 > 2 for B antigens, but not by chain length. The highest-affinity ligands are B type 3 (3000 ± 300 M⁻¹) and A type 6 (2350 ± 60 M⁻¹). While the higher affinity to the type 3 H antigen was previously observed, preferential binding to the types 6 and 3 antigens with A and B epitopes, respectively, has not been previously reported. A truncated P domain dimer (lacking the C-terminal arginine cluster) exhibits similar binding. The central-binding motifs in the HBGAs were identified by molecular-docking simulations.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Blood Group Antigens / chemistry
  • Blood Group Antigens / immunology
  • Blood Group Antigens / metabolism*
  • Epitopes / chemistry
  • Humans
  • Molecular Docking Simulation
  • Norovirus / chemistry
  • Norovirus / metabolism*
  • Oligosaccharides / metabolism
  • Protein Binding
  • Protein Multimerization
  • Receptors, Virus / chemistry
  • Receptors, Virus / immunology
  • Receptors, Virus / metabolism*
  • Spectrometry, Mass, Electrospray Ionization
  • Viral Proteins / chemistry
  • Viral Proteins / metabolism*

Substances

  • Blood Group Antigens
  • Epitopes
  • Oligosaccharides
  • Receptors, Virus
  • Viral Proteins