Dyadobacter tibetensis sp. nov., isolated from glacial ice core

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3636-3639. doi: 10.1099/ijs.0.050328-0. Epub 2013 Apr 19.

Abstract

A Gram-stain-negative, rod-shaped, aerobic, non-motile bacterium, designated Y620-1(T), was isolated from a glacier on the Tibetan Plateau, China. The 16S rRNA gene sequence of the novel isolate shared 93.6-95.1 % similarity with type strains of species of the genus Dyadobacter. The major fatty acids of strain Y620-1(T) were summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH), iso-C15 : 0, C16 : 1ω5c and iso-C17 : 0 3-OH. The predominant isoprenoid quinone and polar lipid were MK-7 and phosphatidylethanolamine (PE), respectively. The DNA G+C content was 44.4±0.3 mol% (Tm). Flexirubin-type pigment was produced. The novel isolate was classified in the genus Dyadobacter, but a number of phenotypic characteristics distinguished the novel isolate from type strains of species of the genus Dyadobacter. From these genotypic and phenotypic data, it is evident that strain Y620-1(T) represents a novel species of the genus Dyadobacter, for which the name Dyadobacter tibetensis sp. nov. is proposed. The type strain is Y620-1(T) ( = JCM 18589(T) = CGMCC 1.12215(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • China
  • Cytophagaceae / classification*
  • Cytophagaceae / genetics
  • Cytophagaceae / isolation & purification
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Ice Cover / microbiology*
  • Ice*
  • Molecular Sequence Data
  • Phosphatidylethanolamines
  • Phylogeny*
  • Polyenes / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Ice
  • Phosphatidylethanolamines
  • Polyenes
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • phosphatidylethanolamine
  • flexirubins
  • menaquinone 7

Associated data

  • GENBANK/JQ824420