Molecular characterization of the reniform nematode C-type lectin gene family reveals a likely role in mitigating environmental stresses during plant parasitism

Gene. 2014 Mar 10;537(2):269-78. doi: 10.1016/j.gene.2013.12.048. Epub 2014 Jan 12.

Abstract

The reniform nematode, Rotylenchulus reniformis, is a damaging semi-endoparasitic pathogen of more than 300 plant species. Transcriptome sequencing of R. reniformis parasitic females revealed an enrichment for sequences homologous to C-type lectins (CTLs), an evolutionarily ancient family of Ca(+2)-dependent carbohydrate-binding proteins that are involved in the innate immune response. To gain further insight as to the potential role of CTLs in facilitating plant parasitism by R. reniformis, we performed a comprehensive assessment of the CTL gene family. 5'- and 3'-RACE experiments identified a total of 11 R. reniformis CTL transcripts (Rr-ctl-1 through Rr-ctl-11) that ranged in length from 1083 to 1,194 bp and showed 93-99% identity with one another. An alignment of cDNA and genomic sequences revealed three introns with the first intron residing within the 5'-untranslated region. BLAST analyses showed the closest homologs belonging to the parasitic nematodes Heligmosomoides polygyrus and Heterodera glycines. Rr-ctl-1, -2, and -3 were expressed throughout the R. reniformis life cycle; whereas, the remaining Rr-ctl genes showed life stage-specific expression. Quantitative real time RT-PCR determined that Rr-ctl transcripts were 839-fold higher in sedentary female nematodes than the next most abundant life stage. Predicted Rr-CTL peptides ranged from 301 to 338 amino acids long, possessed an N-terminal signal peptide for secretion, and contained a conserved CLECT domain, including the mannose-binding motifs EPN and EPD and the conserved WND motif that is required for binding Ca(+2). In addition, Rr-CTL peptides harbored repeats of a novel 17-mer motif within their C-terminus that showed similarity to motifs associated with bacterial ice nucleation proteins. In situ hybridization of Rr-ctl transcripts within sedentary females showed specific accumulation within the hypodermis of the body regions exposed to the soil environment; those structures embedded within the root during parasitism did not show Rr-ctl expression. A phylogenetic analysis of the Rr-CTL CLECT domain with homologous domains from other nematode species suggested that CTLs from animal- and plant-parasitic genera may have evolved in order to play an active role in the parasitic process.

Keywords: C-type lectin; CTL; Ice nucleation; Parasitism; Reniform nematode; Rotylenchulus.

MeSH terms

  • 5' Untranslated Regions
  • Amino Acid Motifs
  • Amino Acid Sequence
  • Animals
  • DNA, Complementary
  • Expressed Sequence Tags
  • Female
  • Gene Expression Regulation
  • Genes, Helminth*
  • Introns
  • Lectins, C-Type / chemistry
  • Lectins, C-Type / genetics*
  • Lectins, C-Type / metabolism*
  • Male
  • Molecular Sequence Data
  • Multigene Family
  • Phylogeny
  • Plants / parasitology*
  • Protein Structure, Tertiary
  • Stress, Physiological / genetics
  • Subcutaneous Tissue
  • Tylenchoidea / genetics*
  • Tylenchoidea / growth & development
  • Tylenchoidea / physiology

Substances

  • 5' Untranslated Regions
  • DNA, Complementary
  • Lectins, C-Type