A method is proposed for controlling the assembly of colloidal magnetic core-shell nanoparticles into patterned monolayer structures with nanoscale feature resolution. The method is based on magnetic field-directed self-assembly that is enhanced using soft-magnetic template elements. The elements are embedded in a nonmagnetic substrate and magnetized using a uniform bias field. A key feature of this approach is the combined use of a uniform field with induced gradient-fields produced by the template elements. This enables the customization of a force field with localized regions of attractive and repulsive magnetic forces that provide extraordinary control of particle motion during assembly. The method is demonstrated using a computational model that simulates the assembly process taking into account magnetic and hydrodynamic forces including interparticle interactions, Brownian diffusion, van der Waals force and effects of surfactants. The analysis shows that extended geometric patterns of particles can be assembled with nanoscale resolution, beyond that of the template elements, within milliseconds. This is achieved by tailoring key parameters including the template geometry to produce a force field that focuses the particles into prescribed patterns; the thickness of the dielectric particle shell to control the magnetic dipole-dipole force upon contact and the particle volume fraction to suppress undesired aggregation during assembly. The proposed method broadly applies to arbitrary template geometries and multi-layered core-shell particles with at least one magnetic component. It can enable the self-assembly of complex patterns of nanoparticles and open up opportunities for the scalable fabrication of multifunctional nanostructured materials for a broad range of applications.