Do it yourself guide to genome assembly

Brief Funct Genomics. 2016 Jan;15(1):1-9. doi: 10.1093/bfgp/elu042. Epub 2014 Nov 11.

Abstract

Bioinformatics skills required for genome sequencing often represent a significant hurdle for many researchers working in computational biology. This humble effort highlights the significance of genome assembly as a research area, focuses on its need to remain accurate, provides details about the characteristics of the raw data, examines some key metrics, emphasizes some tools and draws attention to a generic tutorial with example data that outlines the whole pipeline for next-generation sequencing. The article concludes by pointing out some major future research problems.

Keywords: Eulerian path; comparative assembly; de novo assembly; de-Bruijn graphs; genome assembly; next-generation sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Computational Biology / methods*
  • Genome, Human*
  • Genomics / methods*
  • High-Throughput Nucleotide Sequencing / methods*
  • Humans
  • Sequence Analysis, DNA / methods*