ZmMBD101 is a DNA-binding protein that maintains Mutator elements chromatin in a repressive state in maize

Plant Cell Environ. 2016 Jan;39(1):174-84. doi: 10.1111/pce.12604. Epub 2015 Oct 19.

Abstract

In maize (Zea mays), as well as in other crops, transposable elements (TEs) constitute a great proportion of the genome. Chromatin modifications play a vital role in establishing transposon silencing and perpetuating the acquired repressive state. Nucleosomes associated with TEs are enriched for dimethylation of histone H3 at lysine 9 and 27 (H3K9me2 and H3K27me2, respectively), signals of repressive chromatin. Here, we describe a chromatin protein, ZmMBD101, involved in the regulation of Mutator (Mu) genes in maize. ZmMBD101 is localized to the nucleus and contains a methyl-CpG-binding domain (MBD) and a zinc finger CW (CW) domain. Transgenic lines with reduced levels of ZmMBD101 transcript present enhanced induction of Mu genes when plants are irradiated with UV-B. Chromatin immunoprecipitation analysis with H3K9me2 and H3K27me2 antibodies indicated that ZmMBD101 is required to maintain the levels of these histone repressive marks at Mu terminal inverted repeats (TIRs) under UV-B conditions. Although Mutator inactivity is associated with DNA methylation, cytosine methylation at Mu TIRs is not affected in ZmMBD101 deficient plants. Several plant proteins are predicted to share the simple CW-MBD domain architecture present in ZmMBD101. We hypothesize that plant CW-MBD proteins may also function to protect plant genomes from deleterious transposition.

Keywords: UV-B; methyl-CpG-binding domain proteins; transposon elements.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / cytology
  • Arabidopsis / genetics
  • Arabidopsis / metabolism
  • Arabidopsis / radiation effects
  • Cell Nucleus / metabolism
  • Chromatin / genetics
  • DNA Methylation
  • DNA Transposable Elements / genetics*
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Epigenesis, Genetic
  • Gene Expression Regulation, Plant
  • Genes, Reporter
  • Genome, Plant / genetics*
  • Histones / genetics
  • Histones / metabolism
  • Mutation
  • Phylogeny
  • Plant Proteins / genetics
  • Plant Proteins / metabolism*
  • Plants, Genetically Modified
  • Protein Transport
  • RNA Interference
  • Recombinant Fusion Proteins
  • Ultraviolet Rays
  • Zea mays / cytology
  • Zea mays / genetics*
  • Zea mays / metabolism
  • Zea mays / radiation effects

Substances

  • Chromatin
  • DNA Transposable Elements
  • DNA-Binding Proteins
  • Histones
  • Plant Proteins
  • Recombinant Fusion Proteins