Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan

FEBS Lett. 2016 Apr;590(8):1280-8. doi: 10.1002/1873-3468.12162. Epub 2016 Apr 6.

Abstract

Human dendritic cell inhibitory receptor (DCIR) is a C-type lectin receptor expressed in classical dendritic cells and accepts several oligosaccharide ligands including N-glycans. Here, we report the crystal structures of human DCIR C-type lectin domains in the absence and presence of a branched N-glycan unit. The domain has a typical C-type lectin fold and two bound calcium ions. In the ligand-bound form, the disaccharide unit (GlcNAcβ1-2Man) acceptably fits the electron density map, indicating that it forms the main epitope. The recognition of the nonterminal N-glycan unit explains the relatively broad specificity of this lectin.

Keywords: C-type lectin; N-glycan; crystal structure.

Publication types

  • Letter
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Crystallography, X-Ray
  • Dendritic Cells / metabolism*
  • Humans
  • Lectins, C-Type / chemistry*
  • Ligands
  • Mice
  • Polysaccharides / chemistry*
  • Protein Binding
  • Protein Domains
  • Receptors, Cell Surface / chemistry*
  • Sequence Alignment

Substances

  • Lectins, C-Type
  • Ligands
  • Polysaccharides
  • Receptors, Cell Surface