Non-native ligands define the active site of Pennisetum glaucum (L.) R. Br dehydroascorbate reductase

Biochem Biophys Res Commun. 2016 May 13;473(4):1152-1157. doi: 10.1016/j.bbrc.2016.04.031. Epub 2016 Apr 9.

Abstract

Dehydroascorbate reductase (DHAR), a member of the glutathione-S-transferase (GST) family, reduces dehydroascorbate (DHA) to ascorbate (AsA; Vitamin-C) in a glutathione (GSH)-dependent manner and in doing so, replenishes the critical AsA pool of the cell. To understand the enzyme mechanism in detail, we determined the crystal structure of a plant DHAR from Pennisetum glaucum (PgDHAR) using Iodide-Single Anomalous Dispersion (SAD) and Molecular replacement methods, in two different space groups. Here, we show PgDHAR in complex with two non-native ligands, viz. an acetate bound at the G-site, which resembles the γ-carboxyl moiety of GSH, and a glycerol at the H-site, which shares the backbone of AsA. We also show that, in the absence of bound native substrates, these non-native ligands help define the critical 'hook points' in the DHAR enzyme active site. Further, our data suggest that these non-native ligands can act as the logical bootstrapping points for iterative design of inhibitors/analogs for DHARs.

Keywords: Active site; Ascorbate; Dehydroascorbate reductase; Glutathione; Non-native ligands; Pennisetum glaucum.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ascorbic Acid / chemistry*
  • Binding Sites
  • Enzyme Activation
  • Glutathione Transferase / chemistry*
  • Glutathione Transferase / ultrastructure*
  • Ligands
  • Molecular Docking Simulation
  • Pennisetum / metabolism*
  • Plant Proteins / analysis
  • Plant Proteins / chemistry*
  • Protein Binding
  • Protein Conformation
  • Substrate Specificity

Substances

  • Ligands
  • Plant Proteins
  • Glutathione Transferase
  • Ascorbic Acid