Molecular basis for oncohistone H3 recognition by SETD2 methyltransferase

Genes Dev. 2016 Jul 15;30(14):1611-6. doi: 10.1101/gad.284323.116.

Abstract

High-frequency point mutations of genes encoding histones have been identified recently as novel drivers in a number of tumors. Specifically, the H3K36M/I mutations were shown to be oncogenic in chondroblastomas and undifferentiated sarcomas by inhibiting H3K36 methyltransferases, including SETD2. Here we report the crystal structures of the SETD2 catalytic domain bound to H3K36M or H3K36I peptides with SAH (S-adenosylhomocysteine). In the complex structure, the catalytic domain adopts an open conformation, with the K36M/I peptide snuggly positioned in a newly formed substrate channel. Our structural and biochemical data reveal the molecular basis underying oncohistone recognition by and inhibition of SETD2.

Keywords: SETD2 methyltransferase; crystal structure, epigenetic regulation; oncohistone.

MeSH terms

  • Catalytic Domain
  • Chondroblastoma / enzymology
  • Chondroblastoma / physiopathology
  • Crystallization
  • Enzyme Activation / genetics
  • Escherichia coli / genetics
  • Histone-Lysine N-Methyltransferase / chemistry*
  • Histone-Lysine N-Methyltransferase / metabolism*
  • Histones / chemistry*
  • Histones / genetics
  • Histones / metabolism*
  • Humans
  • Models, Molecular*
  • Mutation
  • Peptides / metabolism
  • Protein Binding
  • Protein Structure, Quaternary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sarcoma / enzymology
  • Sarcoma / physiopathology

Substances

  • Histones
  • Peptides
  • Recombinant Proteins
  • Histone-Lysine N-Methyltransferase
  • SETD2 protein, mouse