Distribution and effects of amino acid changes in drug-resistant α and β herpesviruses DNA polymerase

Nucleic Acids Res. 2016 Nov 16;44(20):9530-9554. doi: 10.1093/nar/gkw875. Epub 2016 Sep 29.

Abstract

Emergence of drug-resistance to all FDA-approved antiherpesvirus agents is an increasing concern in immunocompromised patients. Herpesvirus DNA polymerase (DNApol) is currently the target of nucleos(t)ide analogue-based therapy. Mutations in DNApol that confer resistance arose in immunocompromised patients infected with herpes simplex virus 1 (HSV-1) and human cytomegalovirus (HCMV), and to lesser extent in herpes simplex virus 2 (HSV-2), varicella zoster virus (VZV) and human herpesvirus 6 (HHV-6). In this review, we present distinct drug-resistant mutational profiles of herpesvirus DNApol. The impact of specific DNApol amino acid changes on drug-resistance is discussed. The pattern of genetic variability related to drug-resistance differs among the herpesviruses. Two mutational profiles appeared: one favoring amino acid changes in the Palm and Finger domains of DNApol (in α-herpesviruses HSV-1, HSV-2 and VZV), and another with mutations preferentially in the 3'-5' exonuclease domain (in β-herpesvirus HCMV and HHV-6). The mutational profile was also related to the class of compound to which drug-resistance emerged.

Publication types

  • Review

MeSH terms

  • Amino Acid Substitution*
  • Animals
  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology
  • Catalysis
  • Conserved Sequence
  • DNA Polymerase I / chemistry
  • DNA Polymerase I / genetics*
  • DNA Polymerase I / metabolism*
  • DNA Polymerase beta / chemistry
  • DNA Polymerase beta / genetics*
  • DNA Polymerase beta / metabolism*
  • DNA-Directed DNA Polymerase / chemistry
  • DNA-Directed DNA Polymerase / genetics*
  • DNA-Directed DNA Polymerase / metabolism*
  • Drug Resistance, Viral*
  • Enzyme Activation
  • Evolution, Molecular
  • Exodeoxyribonucleases / chemistry
  • Exodeoxyribonucleases / genetics*
  • Exodeoxyribonucleases / metabolism*
  • Herpesviridae / classification
  • Herpesviridae / drug effects
  • Herpesviridae / genetics
  • Humans
  • Mutation
  • Phenotype
  • Protein Interaction Domains and Motifs
  • Protein Multimerization
  • Structure-Activity Relationship
  • Viral Proteins / chemistry
  • Viral Proteins / genetics*
  • Viral Proteins / metabolism*

Substances

  • Antiviral Agents
  • Viral Proteins
  • DNA Polymerase I
  • DNA Polymerase beta
  • DNA-Directed DNA Polymerase
  • Exodeoxyribonucleases
  • DNA polymerase, Simplexvirus