Genome-wide analysis and expression characteristics of small auxin-up RNA (SAUR) genes in moso bamboo (Phyllostachys edulis)

Genome. 2017 Apr;60(4):325-336. doi: 10.1139/gen-2016-0097. Epub 2016 Nov 15.

Abstract

Moso bamboo (Phyllostachys edulis) is well known for its rapid shoot growth. Auxin exerts pleiotropic effects on plant growth. The small auxin-up RNA (SAUR) genes are early auxin-responsive genes involved in plant growth. In total, 38 SAUR genes were identified in P. edulis (PheSAUR). A comprehensive overview of the PheSAUR gene family is presented, including the gene structures, phylogeny, and subcellular location predictions. A transcriptome analysis indicated that 37 (except PheSAUR18) of the PheSAUR genes were expressed during shoot growth process and that the PheSAUR genes were differentially expressed. Furthermore, quantitative real-time PCR analysis indicated that all of the PheSAUR genes could be induced in different tissues of seedlings and that 37 (except PheSAUR41) of the PheSAUR genes were up-regulated after indole-3-acetic acid (IAA) treatment. These results reveal a comprehensive overview of the PheSAUR gene family and may pave the way for deciphering their functions during bamboo development.

Keywords: AIA; IAA; PheSAUR; Phyllostachys edulis; croissance de la tige; qRT-PCR; shoot growth.

MeSH terms

  • Gene Expression Profiling / methods*
  • Gene Expression Regulation, Developmental
  • Gene Expression Regulation, Plant / drug effects
  • Genome, Plant
  • Indoleacetic Acids / pharmacology*
  • Multigene Family / drug effects
  • Phylogeny
  • Plant Proteins / genetics*
  • Plant Shoots / genetics
  • Plant Shoots / growth & development
  • Poaceae / genetics*
  • Poaceae / growth & development

Substances

  • Indoleacetic Acids
  • Plant Proteins
  • indoleacetic acid