15N CEST data and traditional model-free analysis capture fast internal dynamics of DJ-1

Anal Biochem. 2018 Feb 1:542:24-28. doi: 10.1016/j.ab.2017.11.012. Epub 2017 Nov 21.

Abstract

Previous studies have shown that relaxation parameters and fast protein dynamics can be quickly elucidated from 15N-CEST experiments [1]. Longitudinal R1 and transverse R2 values were reliably derived from fitting of CEST profiles. Herein we show that 15N-CEST experiments and traditional modelfree analysis provide the internal dynamics of three states of human protein DJ-1 at physiological temperature. The chemical exchange profiles show the absence of a minor state conformation and, in conjunction with 1H-15N NOEs, show increased mobility. R1 and R2 values remained relatively unchanged at the three naturally occurring oxidation states of DJ-1, but exhibit striking NOE differences. The NOE data was, therefore, essential in determining the internal motions of the DJ-1 proteins. To the authors' knowledge, we present the first study that combines 15N CEST data with traditional model-free analyses in the study of a biological system and affirm that more 'lean' model-free approaches should be used cautiously.

Keywords: CEST; DJ-1; NMR; Protein dynamics.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Calcium-Binding Proteins / analysis*
  • Calcium-Binding Proteins / metabolism
  • Humans
  • Nitrogen Isotopes
  • Nuclear Magnetic Resonance, Biomolecular*
  • Repressor Proteins / analysis*
  • Repressor Proteins / metabolism

Substances

  • Calcium-Binding Proteins
  • EFCAB6 protein, human
  • Nitrogen Isotopes
  • Nitrogen-15
  • Repressor Proteins