Isolation, characterization and genomic analysis of a novel lytic bacteriophage vB_SsoS-ISF002 infecting Shigella sonnei and Shigella flexneri

J Med Microbiol. 2018 Mar;67(3):376-386. doi: 10.1099/jmm.0.000683. Epub 2018 Jan 30.

Abstract

Purpose: Shigellosis is one of the most important food-borne and water-borne diseases worldwide. Although antibiotics are considered as efficient agents for shigellosis treatment, improper use of these has led to the emergence of antibiotic-resistant Shigella spp. Therefore, finding a new strategy as alternative treatment seems necessary.

Methodology: Different samples from a wastewater treatment plant were used to isolate Shigella spp. specific phages. Physiological properties were determined, and genomic analysis was also carried out.

Results: A virulent Siphoviridae bacteriophage, vB_SsoS-ISF002, was isolated from urban wastewater in Iran and showed infectivity to different isolates of both Shigella sonnei and Shigella flexneri. vB_SsoS-ISF002 was stable at different pH values and temperatures. It had a short latent period (15 min), a large burst size (76±9 p.f.u. cell-1) and appropriate lytic activity especially at high MOI. Its genome (dsDNA) was 50 564 bp with 45.53 % GC content and 76 predicted open reading frames. According to comparative genomic analysis and phylogenic tree construction, vB_SsoS-ISF002 was considered as a member of the T1virus genus.

Conclusion: These results indicated that vB_SsoS-ISF002 is a novel virulent T1virus phage and may have potential as an alternative treatment for shigellosis.

Keywords: Shigella flexneri; Shigella sonnei; Shigellosis; Siphoviridae; T1virus; phage therapy.

MeSH terms

  • Anti-Bacterial Agents / pharmacology
  • Base Composition
  • DNA, Viral
  • Dysentery, Bacillary / therapy
  • Genome, Viral*
  • Genomics
  • Humans
  • Phage Therapy
  • Phylogeny
  • Sequence Analysis, DNA
  • Shigella flexneri / drug effects
  • Shigella flexneri / virology*
  • Shigella sonnei / drug effects
  • Shigella sonnei / virology*
  • Siphoviridae / classification
  • Siphoviridae / genetics*
  • Siphoviridae / isolation & purification*
  • Siphoviridae / physiology
  • Wastewater / microbiology
  • Wastewater / virology

Substances

  • Anti-Bacterial Agents
  • DNA, Viral
  • Waste Water