Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Genome Biol. 2018 Aug 17;19(1):111. doi: 10.1186/s13059-018-1491-4.

Abstract

The Wheat@URGI portal has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence produced by the International Wheat Genome Sequencing Consortium. Genome browsers, BLAST, and InterMine tools have been established for in-depth exploration of the genome sequence together with additional linked datasets including physical maps, sequence variations, gene expression, and genetic and phenomic data from other international collaborative projects already stored in the GnpIS information system. The portal provides enhanced search and browser features that will facilitate the deployment of the latest genomics resources in wheat improvement.

Keywords: Big data; Data integration; Information system; Wheat genomics, genetics and phenomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Bread
  • Data Mining
  • Gene Expression Regulation, Plant
  • Genes, Plant
  • Genome, Plant*
  • Phenotype
  • Reference Standards
  • Sequence Analysis, DNA*
  • Triticum / genetics*