Conformational plasticity in the KcsA potassium channel pore helix revealed by homo-FRET studies

Sci Rep. 2019 Apr 17;9(1):6215. doi: 10.1038/s41598-019-42405-5.

Abstract

Potassium channels selectivity filter (SF) conformation is modulated by several factors, including ion-protein and protein-protein interactions. Here, we investigate the SF dynamics of a single Trp mutant of the potassium channel KcsA (W67) using polarized time-resolved fluorescence measurements. For the first time, an analytical framework is reported to analyze the homo-Förster resonance energy transfer (homo-FRET) within a symmetric tetrameric protein with a square geometry. We found that in the closed state (pH 7), the W67-W67 intersubunit distances become shorter as the average ion occupancy of the SF increases according to cation type and concentration. The hypothesis that the inactivated SF at pH 4 is structurally similar to its collapsed state, detected at low K+, pH 7, was ruled out, emphasizing the critical role played by the S2 binding site in the inactivation process of KcsA. This homo-FRET approach provides complementary information to X-ray crystallography in which the protein conformational dynamics is usually compromised.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anisotropy
  • Binding Sites
  • Crystallography, X-Ray / methods
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / metabolism*
  • Fluorescence Polarization
  • Fluorescence Resonance Energy Transfer / methods*
  • Hydrogen-Ion Concentration
  • Ion Channel Gating
  • Potassium / metabolism
  • Potassium Channels / chemistry*
  • Potassium Channels / metabolism*
  • Protein Conformation*
  • Sodium / metabolism

Substances

  • Escherichia coli Proteins
  • Potassium Channels
  • Sodium
  • Potassium