Development of a Cyclic Peptide Inhibitor of the p6/UEV Protein-Protein Interaction

ACS Chem Biol. 2019 Sep 20;14(9):1874-1878. doi: 10.1021/acschembio.9b00627. Epub 2019 Aug 14.

Abstract

The budding of HIV from infected cells is driven by the protein-protein interaction between the p6 domain of the HIV Gag protein and the UEV domain of the human TSG101 protein. We report the development of a cyclic peptide inhibitor of the p6/UEV interaction, from a non cell-permeable parent that was identified in a SICLOPPS screen. Amino acids critical for the activity of the parent cyclic peptide were uncovered using alanine-scanning, and a series of non-natural analogues synthesized and assessed. The most potent molecule disrupts the p6/UEV interaction with an IC50 of 6.17 ± 0.24 μM by binding to UEV with a Kd of 11.9 ± 2.8 μM. This compound is cell permeable and active in a cellular virus-like particle budding assay with an IC50 of ∼2 μM. This work further demonstrates the relative simplicity with which the potency and activity of cyclic peptides identified from SICLOPPS libraries can be optimized.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Drug Development
  • Endosomal Sorting Complexes Required for Transport / chemistry
  • Endosomal Sorting Complexes Required for Transport / genetics
  • Endosomal Sorting Complexes Required for Transport / metabolism*
  • Escherichia coli / genetics
  • HEK293 Cells
  • HIV / chemistry
  • HIV / drug effects
  • HeLa Cells
  • Humans
  • Peptides, Cyclic / pharmacology*
  • Peptides, Cyclic / toxicity
  • Protein Binding / drug effects*
  • Protein Domains
  • Transcription Factors / chemistry
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*
  • Virus Release / drug effects
  • gag Gene Products, Human Immunodeficiency Virus / metabolism*

Substances

  • DNA-Binding Proteins
  • Endosomal Sorting Complexes Required for Transport
  • Peptides, Cyclic
  • Transcription Factors
  • Tsg101 protein
  • gag Gene Products, Human Immunodeficiency Virus
  • p6 gag protein, Human immunodeficiency virus 1