A Prion Epigenetic Switch Establishes an Active Chromatin State

Cell. 2020 Mar 5;180(5):928-940.e14. doi: 10.1016/j.cell.2020.02.014. Epub 2020 Feb 27.

Abstract

Covalent modifications to histones are essential for development, establishing distinct and functional chromatin domains from a common genetic sequence. Whereas repressed chromatin is robustly inherited, no mechanism that facilitates inheritance of an activated domain has been described. Here, we report that the Set3C histone deacetylase scaffold Snt1 can act as a prion that drives the emergence and transgenerational inheritance of an activated chromatin state. This prion, which we term [ESI+] for expressed sub-telomeric information, is triggered by transient Snt1 phosphorylation upon cell cycle arrest. Once engaged, the prion reshapes the activity of Snt1 and the Set3C complex, recruiting RNA pol II and interfering with Rap1 binding to activate genes in otherwise repressed sub-telomeric domains. This transcriptional state confers broad resistance to environmental stress, including antifungal drugs. Altogether, our results establish a robust means by which a prion can facilitate inheritance of an activated chromatin state to provide adaptive benefit.

Keywords: Set3C; chromatin regulator; epigenetic inheritance; histone deacetylase; prion; stress response; sub-telomeres; transcription activation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cell Cycle Checkpoints / genetics
  • Chromatin / genetics*
  • Histone Code / genetics
  • Histone Deacetylases / genetics*
  • Histones / genetics
  • Nuclear Proteins / genetics*
  • Phosphorylation / genetics
  • Prions / genetics
  • RNA Polymerase II / genetics
  • Saccharomyces cerevisiae
  • Saccharomyces cerevisiae Proteins / genetics*
  • Shelterin Complex
  • Telomere / genetics
  • Telomere-Binding Proteins / genetics*
  • Transcription Factors / genetics*
  • Transcription, Genetic

Substances

  • Chromatin
  • Histones
  • Nuclear Proteins
  • Prions
  • RAP1 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Shelterin Complex
  • Telomere-Binding Proteins
  • Transcription Factors
  • RNA Polymerase II
  • Set3 protein, S cerevisiae
  • Histone Deacetylases
  • SNT1 protein, S cerevisiae