Molecular Basis for ADP-Ribose Binding to the Mac1 Domain of SARS-CoV-2 nsp3

Biochemistry. 2020 Jul 21;59(28):2608-2615. doi: 10.1021/acs.biochem.0c00309. Epub 2020 Jul 6.

Abstract

The virus that causes COVID-19, SARS-CoV-2, has a large RNA genome that encodes numerous proteins that might be targets for antiviral drugs. Some of these proteins, such as the RNA-dependent RNA polymerase, helicase, and main protease, are well conserved between SARS-CoV-2 and the original SARS virus, but several others are not. This study examines one of the proteins encoded by SARS-CoV-2 that is most different, a macrodomain of nonstructural protein 3 (nsp3). Although 26% of the amino acids in this SARS-CoV-2 macrodomain differ from those observed in other coronaviruses, biochemical and structural data reveal that the protein retains the ability to bind ADP-ribose, which is an important characteristic of beta coronaviruses and a potential therapeutic target.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adenosine Diphosphate Ribose / metabolism
  • Betacoronavirus / chemistry*
  • COVID-19
  • Coronavirus / chemistry
  • Coronavirus Infections / drug therapy
  • Coronavirus Infections / virology
  • Coronavirus Papain-Like Proteases
  • Crystallography, X-Ray
  • Drug Delivery Systems
  • Humans
  • Models, Molecular
  • Pandemics
  • Pneumonia, Viral / drug therapy
  • Pneumonia, Viral / virology
  • Protein Domains
  • SARS-CoV-2
  • Thermodynamics
  • Viral Nonstructural Proteins / chemistry*
  • Viral Nonstructural Proteins / metabolism

Substances

  • Viral Nonstructural Proteins
  • Adenosine Diphosphate Ribose
  • Coronavirus Papain-Like Proteases
  • papain-like protease, SARS-CoV-2