Discovery and Biosynthetic Investigation of a New Antibacterial Dehydrated Non-Ribosomal Tripeptide

Angew Chem Int Ed Engl. 2021 Feb 8;60(6):3229-3237. doi: 10.1002/anie.202012902. Epub 2020 Dec 11.

Abstract

Dehydroalanine (Dha) and dehydrobutyrine (Dhb) display considerable flexibility in a variety of chemical and biological reactions. Natural products containing Dha and/or Dhb residues are often found to display diverse biological activities. While the (Z) geometry is predominant in nature, only a handful of metabolites containing (E)-Dhb have been found thus far. Here we report discovery of a new antimicrobial peptide, albopeptide, through NMR analysis and chemical synthesis, which contains two contiguous unsaturated residues, Dha-(E)-Dhb. It displays narrow-spectrum activity against vancomycin-resistant Enterococcus faecium. In-vitro biochemical assays show that albopeptide originates from a noncanonical NRPS pathway featuring dehydration processes and catalysed by unusual condensation domains. Finally, we provide evidence of the occurrence of a previously untapped group of short unsaturated peptides in the bacterial kingdom, suggesting an important biological function in bacteria.

Keywords: dehydroamino acids; in-vitro pathway reconstitution; natural product discovery; nonribosomal peptide synthetases; peptide synthesis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / analogs & derivatives
  • Alanine / chemistry
  • Aminobutyrates / chemistry
  • Anti-Bacterial Agents / biosynthesis*
  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / pharmacology
  • Antimicrobial Cationic Peptides / biosynthesis
  • Antimicrobial Cationic Peptides / chemistry*
  • Antimicrobial Cationic Peptides / pharmacology
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Drug Evaluation, Preclinical
  • Drug Resistance, Bacterial / drug effects
  • Enterococcus faecium / drug effects
  • Multigene Family
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Biosynthesis, Nucleic Acid-Independent
  • Peptide Synthases / genetics
  • Peptide Synthases / metabolism
  • Stereoisomerism
  • Streptomyces / enzymology
  • Streptomyces / metabolism

Substances

  • Aminobutyrates
  • Anti-Bacterial Agents
  • Antimicrobial Cationic Peptides
  • Bacterial Proteins
  • dehydrobutyrine
  • dehydroalanine
  • Peptide Synthases
  • non-ribosomal peptide synthase
  • Alanine

Supplementary concepts

  • Streptomyces albofaciens