Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of alpha-Amy2 genes

Plant Mol Biol. 1995 Nov;29(4):691-702. doi: 10.1007/BF00041160.

Abstract

The promoters of wheat, barley and wild oat alpha-Amy2 genes contain a number of conserved cis-acting elements that bind nuclear protein, we report here the isolation of two cDNAs encoding proteins (ABF1 and ABF2) that bind specifically to one of these elements, Box 2 (ATTGACTTGACCGTCATCGG). The two proteins are unrelated to each other except for a conserved region of 56-58 amino acids that consists of 25 highly conserved amino acids followed by a putative zinc finger motif, C-X4-5-C-X22-23-H-X1-H. ABF1 contains two such conserved regions, whereas ABF2 possesses only one but also contains a potential leucine zipper motif, suggesting that it could form homo- or heterodimers. ABF1 and ABF2 expressed in Escherichia coli bound specifically to Box 2 probes in gel retardation experiments; this binding was abolished by the transition-metal-chelating agent, 1,10-o-phenanthroline and by EDTA. We propose that ABF1 and ABF2 are representatives of two classes of a new family of plant sequence-specific DNA-binding proteins.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Avena / enzymology
  • Avena / genetics*
  • Base Sequence
  • Blotting, Northern
  • Conserved Sequence
  • DNA, Plant / metabolism*
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Escherichia coli / genetics
  • Gene Library
  • Molecular Sequence Data
  • Multigene Family
  • Promoter Regions, Genetic*
  • Protein Binding
  • Recombinant Proteins / metabolism
  • Saccharomyces cerevisiae Proteins*
  • Selection, Genetic
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Transcription Factors / genetics*
  • Transcription Factors / metabolism
  • alpha-Amylases / genetics*

Substances

  • ABF1 protein, S cerevisiae
  • ABF2 protein, S cerevisiae
  • DNA, Plant
  • DNA-Binding Proteins
  • Recombinant Proteins
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors
  • alpha-Amylases

Associated data

  • GENBANK/Z48429
  • GENBANK/Z48431