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    Tcp11l1 t-complex 11 like 1 [ Mus musculus (house mouse) ]

    Gene ID: 320554, updated on 5-Mar-2024

    Summary

    Official Symbol
    Tcp11l1provided by MGI
    Official Full Name
    t-complex 11 like 1provided by MGI
    Primary source
    MGI:MGI:2444263
    See related
    Ensembl:ENSMUSG00000027175 AllianceGenome:MGI:2444263
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C130096D04Rik
    Summary
    Predicted to be involved in signal transduction. Predicted to be located in microtubule. Orthologous to human TCP11L1 (t-complex 11 like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.0), whole brain E14.5 (RPKM 4.5) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    Location:
    2 E2; 2 54.87 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (104497587..104542525, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104667242..104712169, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 22439 Neighboring gene STARR-positive B cell enhancer ABC_E2044 Neighboring gene cleavage stimulation factor, 3' pre-RNA, subunit 3 Neighboring gene predicted gene 6306 Neighboring gene peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1, retrogene 1 Neighboring gene STARR-seq mESC enhancer starr_05294 Neighboring gene DEP domain containing 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in microtubule ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    T-complex protein 11-like protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177190.5NP_796164.1  T-complex protein 11-like protein 1

      See identical proteins and their annotated locations for NP_796164.1

      Status: PROVISIONAL

      Source sequence(s)
      AL844603, BX908741
      Consensus CDS
      CCDS16491.1
      UniProtKB/Swiss-Prot
      Q8BTG3
      Related
      ENSMUSP00000028597.4, ENSMUST00000028597.4
      Conserved Domains (1) summary
      pfam05794
      Location:78502
      Tcp11; T-complex protein 11

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      104497587..104542525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499734.5XP_006499797.1  T-complex protein 11-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006499797.1

      UniProtKB/Swiss-Prot
      Q8BTG3
      Related
      ENSMUSP00000106747.2, ENSMUST00000111118.8
      Conserved Domains (1) summary
      pfam05794
      Location:78502
      Tcp11; T-complex protein 11
    2. XM_006499735.3XP_006499798.1  T-complex protein 11-like protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05794
      Location:3427
      Tcp11; T-complex protein 11