1700020A23Rik RIKEN cDNA 1700020A23 gene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: 1700020A23Rikprovided by MGI
Official Full Name: RIKEN cDNA 1700020A23 geneprovided by MGI
Primary source: MGI:MGI:1922906
See related: Ensembl:ENSMUSG00000027409 AllianceGenome:MGI:1922906
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Orthologous to human C20orf141 (chromosome 20 open reading frame 141). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward testis adult (RPKM 83.6) See more
Orthologs: human all
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Genomic context

Location:: 2 F1; 2 63.22 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (130247179..130247994)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (130405259..130406074)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein C20orf141 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001163483.1 → NP_001156955.1 uncharacterized protein C20orf141 homolog

See identical proteins and their annotated locations for NP_001156955.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.

Source sequence(s)

BC049710

Consensus CDS

CCDS50710.1

UniProtKB/TrEMBL

Q9DA59

Related

ENSMUSP00000028898.4, ENSMUST00000028898.5
NM_029375.1 → NP_083651.1 uncharacterized protein C20orf141 homolog

See identical proteins and their annotated locations for NP_083651.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.

Source sequence(s)

AK006141, BC049710, BX890605

Consensus CDS

CCDS50710.1

UniProtKB/TrEMBL

Q9DA59

Related

ENSMUSP00000105910.2, ENSMUST00000110281.2