CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS25931.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
25931.1 |
Public |
Mus musculus |
12 |
Sec23a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:20334](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:25931.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 25931.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000021375.11 |
ENSMUSP00000021375.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000021375.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000021375.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000021375](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000021375](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001361956.1 |
NP_001348885.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001361956.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001348885.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001361956](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001348885](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001348885.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_009147.2 |
NP_033173.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_009147.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033173.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009147](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033173](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_033173.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 25931.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2298 nt): ATGACAACCTATTTGGAATTTATCCAACAAAATGAAGAACGAGATGGGGTCCGGTTCAGTTGGAATGTTT GGCCATCGAGTCGTCTGGAAGCTACAAGAATGGTTGTCCCAGTGGCAGCCCTGTTTACACCTCTGAAGGA GAGACCCGACCTACCACCCATCCAGTACGAGCCTGTCCTGTGCAGTAGGACCACTTGCCGTGCAGTTTTG AATCCTTTATGCCAAGTGGATTATCGAGCAAAACTCTGGGCTTGCAACTTTTGTTACCAAAGGAATCAGT TTCCACCTACATATGCTGGGATATCTGAATTGAACCAGCCTGCAGAGCTTTTACCTCAGTTTTCAAGCAT TGAATATGTAGTTCTGCGTGGTCCCCAGATGCCTTTGATATTTCTCTATGTGGTTGATACTTGCATAGAA GATGAGGATTTGCAGGCTCTGAAGGAGTCCATGCAGATGTCGTTGAGCCTTTTGCCACCTACAGCTTTGG TTGGACTTATTACCTTTGGGAGAATGGTGCAGGTTCATGAGCTTGGATGCGAAGGCATCTCAAAGAGCTA TGTCTTCAGAGGAACAAAGGATCTGTCTGCCAAACAACTGCAGGAAATGCTGGGACTCTCTAAAGTACCT GTTACTCAAGCCACACGCGGTCCTCAGGTACAGCAACCGCCTCCTTCCAATAGATTCTTACAGCCAGTAC AGAAAATAGACATGAATCTCACAGATCTTCTGGGAGAACTTCAGCGAGACCCTTGGCCTGTACCACAAGG AAAGAGACCGCTGCGTTCCTCAGGAGTGGCGCTTTCCATAGCTGTGGGACTGCTTGAGTGTACTTTCCCC AACACTGGTGCTCGGATCATGATGTTCATCGGTGGTCCTGCTACCCAGGGGCCTGGCATGGTGGTGGGAG ATGAGCTAAAGACACCTATAAGATCCTGGCACGACATTGAGAAGGACAATGCCAAATATGTTAAAAAGGG AACTAAGCATTTTGAAGCGTTGGCTAATCGAGCTGCTACAACGGGGCATGTCATTGATATCTACGCCTGT GCGTTGGACCAGACAGGCCTGCTGGAGATGAAGTGCTGTCCTAACCTTACTGGAGGATACATGGTAATGG GTGACTCTTTCAATACTTCCTTATTCAAGCAAACTTTTCAAAGAGTCTTCACCAAAGATATACATGGCCA GTTTAAAATGGGCTTTGGTGGCACATTAGAAATAAAGACTTCAAGGGAAATAAAGATTTCAGGAGCTATT GGACCCTGTGTGTCTCTTAATTCAAAAGGACCTTGCGTGTCTGAAAATGAGATTGGAACAGGAGGCACTT GTCAGTGGAAAATCTGTGGCCTCAGCCCCACCACAACCTTAGCCATATATTTTGAAGTTGTTAATCAGCA TAATGCTCCAATTCCTCAAGGAGGACGAGGTGCAGTCCAATTTGTGACCCAGTATCAGCACTCAAGTGGC CAGAGACGCATCCGAGTGACCACAATTGCTAGGAACTGGGCAGATGCTCAAACTCAAATCCAAAATATTG CTGCATCTTTTGACCAGGAAGCAGCTGCCATTCTCATGGCCAGGCTGGCAATATACAGAGCAGAAACAGA GGAAGGGCCAGACGTGCTAAGATGGTTGGACAGACAACTCATTCGACTGTGTCAAAAATTTGGAGAGTAT CACAAAGATGATCCAAATTCCTTCCGGTTTTCAGAAACATTTTCTCTTTATCCTCAGTTTATGTTTCATT TAAGAAGATCTCCTTTCTTGCAAGTTTTTAACAATAGTCCTGATGAGAGTTCATACTATCGTCACCATTT CATGCGTCAGGATCTGACCCAGTCTCTGATCATGATTCAGCCCATTCTGTACGCCTACTCCTTCAGTGGC CCGCCAGAGCCAGTTCTTCTAGACAGCAGCAGCATTCTTGCAGATCGGATTCTCCTCATGGACACGTTCT TCCAGATTTTGATTTATCACGGTGAGACTATAGCACAGTGGCGGAAGTCAGGATACCAGGACATGCCAGA ATATGAGAATTTCCGGCACCTTCTGCAAGCCCCAGTAGATGATGCACAAGAGATTCTTCACTCCAGATTT CCAATGCCGAGATACATTGACACGGAGCATGGTGGCAGCCAGGCTCGTTTCCTCCTTTCGAAAGTCAACC CTTCACAGACTCATAATAACATGTATGCCTGGGGGCAGGAGTCCGGAGCACCAATTCTCACGGATGATGT TAGCTTACAAGTGTTCATGGATCATTTGAAGAAACTTGCAGTGTCGAGTGCTGCTTGA
Translation (765 aa): MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVL NPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCIE DEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVP VTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYAC ALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGGTLEIKTSREIKISGAI GPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAVQFVTQYQHSSG QRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEY HKDDPNSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSG PPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRF PMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA
|