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Report for CCDS23501.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
23501.1 |
Public |
Mus musculus |
9 |
Sema3b |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:20347](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:23501.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 23501.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000073448.11 |
ENSMUSP00000073152.5 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000073448.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000073152.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000073448](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000073152](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000102529.9 |
ENSMUSP00000099588.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000102529.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099588.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000102529](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099588](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000102530.7 |
ENSMUSP00000099589.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000102530.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099589.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000102530](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099589](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000102531.6 |
ENSMUSP00000099590.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000102531.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099590.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000102531](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099590](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000102532.9 |
ENSMUSP00000099591.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000102532.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099591.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000102532](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099591](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001042779.2 |
NP_001036244.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001042779.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001036244.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001042779](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001036244](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001036244.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001291537.1 |
NP_001278466.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001291537.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001278466.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001291537](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001278466](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001278466.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001291538.1 |
NP_001278467.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001291538.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001278467.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001291538](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001278467](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001278467.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001291539.1 |
NP_001278468.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001291539.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001278468.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001291539](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001278468](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001278468.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_009153.3 |
NP_033179.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_009153.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033179.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009153](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033179](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_009153.4 |
NP_033179.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_009153.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033179.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009153](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033179](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_033179.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 23501.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2250 nt): ATGGGGCGGGCTGAGGCCGCCGCCATGATCCCAGGCCTGGCCCTTCTCTGGGTAGCAGGGCTAGGGGATA CTGCCCCTAACCTTCCCCGCCTTCGGCTCTCCTTTCAAGAATTACAGGCCCGGCATGGTGTCCGAACCTT CAGGCTGGAGCGGACCTGCTGTTATGAAGCCTTGCTGGTGGATGAGGAGCGTGGACGCCTGTTTGTGGGT GCTGAGAACCACGTGGCTTCCCTCAGCCTGGACAACATCAGCAAGCGAGCCAAGAAGCTGGCCTGGCCCG CCCCCGTGGAATGGCGTGAAGAATGCAACTGGGCAGGGAAGGACATTGGTACCGAGTGCATGAACTTCGT GAAGCTGCTGCACACCTACAACCACACCCACTTGCTGGCCTGTGGCACAGGGGCTTTCCACCCAACCTGT GCCTTTGTGGAGGTGGGCCACCGGCTGGAGGAACCCATGCTTCAACTGGACCGGAGGAAACTTGAGGACG GCAAGGGGAAGACTCCTTATGACCCAAGGCATCGGGCTGCCTCGGTGCTGGTGGGGGAAGAACTGTATTC TGGGGTGACAGCAGACCTTATGGGCCGGGACTTTACCATCTTTCGAAGCCTTGGTCAGAATCCGAGTCTC CGAACAGAGCCCCATGATTCCCGCTGGCTCAATGAACCCAAGTTTGTCAAGGTCTTTTGGATCCCAGAGA GTGAGAACCCTGATGACGATAAAATCTATTTCTTCTTCCGCGAGTCCGCTGTGGAAGCAGCACCAGCAAT GGGGCGCATGTCTGTGTCTCGTGTTGGCCAGATCTGCAGGAATGACCTGGGTGGCCAGCGGAGCTTGGTC AACAAATGGACCACATTTCTGAAGGCGCGGCTTGTGTGCTCAGTACCTGGAGTTGAGGGTGACACCCACT TTGACCAACTTCAGGATGTTTTCCTTCTGTCCTCCCGAGACCGCCAGACACCTCTTCTCTATGCTGTCTT CTCCACCTCCAGTGGTGTCTTCCAGGGCTCTGCTGTGTGCGTGTACAGCATGAACGATGTGCGCCGAGCC TTCTTGGGACCTTTTGCTCACAAAGAGGGGCCTACACACCAGTGGGTGTCCTACCAGGGTCGTGTCCCCT ACCCAAGACCTGGCATGTGCCCCAGCAAGACCTTTGGCACCTTCAGCTCCACCAAGGACTTCCCAGATGA CGTTATCCAGTTTGCTCGGAACCACCCTCTCATGTACAACCCAGTCCTGCCCATGGGGGGGCGCCCTCTC TTCCTACAAGTGGGAGCTGGGTACACCTTCACCCAAATCGCCGCAGACCGAGTAGCAGCTGCCGATGGAC ACTACGATGTTCTCTTCATTGGTACAGATGTGGGCACAGTGCTGAAAGTGATCTCAGTCCCCAAAGGCAG CCGACCTAATTCTGAAGGACTTCTCCTGGAAGAGCTGCAGGTGTTCGAGGACTCTGCCGCTATCACCAGC ATGCAAATCTCCTCTAAAAGGCAACAACTCTACATAGCATCGCGCAGCGCAGTGGCCCAGATTGCTTTGC ATCGCTGCACTGCCCTAGGCCGCGCCTGCGCAGAATGCTGCTTGGCCCGTGATCCTTACTGCGCCTGGGA TGGATCAGCTTGCACACGCTTCCAGCCTACGGCCAAGAGACGGTTCCGGAGGCAAGACATAAGGAATGGC GACCCCAGCACCCTATGCTCTGGAGACTCTTCTCACTCTGTGCTGCTGGAGAAGAAGGTGTTGGGTGTGG AGAGCGGCAGCGCGTTTCTGGAGTGTGAGCCCCGCTCGCTCCAGGCGCATGTGCAGTGGACCTTCCAAGG TGCAGGGGAGGCAGCTCACACCCAGGTGCTGGCTGAGGAGAGAGTAGAGCGCACTGCGCGGGGGCTGCTG TTGCGGGGGCTGCGGCGCCAGGACTCTGGCGTGTATCTTTGCGTCGCGGTTGAACAAGGCTTTTCACAAC CACTGCGTCGCCTGGTGCTGCATGTGTTGAGTGCGGCGCAGGCTGAACGACTGGCACGGGCAGAGGAAGC AGCCGCTCCTGCACCTCCTGGCCCTAAACTCTGGTACCGGGACTTTCTGCAGTTGGTGGAGCCAGGCGGT GGCGGAGGTGCAAACTCCCTGCGAATGTGCCGCCCGCAGCCCGGGCACCACTCTGTGGCAGCAGATTCAC GTCGTAAGGGTCGCAACAGACGGATGCATGTCTCTGAGCTCCGTGCTGAGCGTGGACCACGTAGTGCAGC TCACTGGTGA
Translation (749 aa): MGRAEAAAMIPGLALLWVAGLGDTAPNLPRLRLSFQELQARHGVRTFRLERTCCYEALLVDEERGRLFVG AENHVASLSLDNISKRAKKLAWPAPVEWREECNWAGKDIGTECMNFVKLLHTYNHTHLLACGTGAFHPTC AFVEVGHRLEEPMLQLDRRKLEDGKGKTPYDPRHRAASVLVGEELYSGVTADLMGRDFTIFRSLGQNPSL RTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPAMGRMSVSRVGQICRNDLGGQRSLV NKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDRQTPLLYAVFSTSSGVFQGSAVCVYSMNDVRRA FLGPFAHKEGPTHQWVSYQGRVPYPRPGMCPSKTFGTFSSTKDFPDDVIQFARNHPLMYNPVLPMGGRPL FLQVGAGYTFTQIAADRVAAADGHYDVLFIGTDVGTVLKVISVPKGSRPNSEGLLLEELQVFEDSAAITS MQISSKRQQLYIASRSAVAQIALHRCTALGRACAECCLARDPYCAWDGSACTRFQPTAKRRFRRQDIRNG DPSTLCSGDSSHSVLLEKKVLGVESGSAFLECEPRSLQAHVQWTFQGAGEAAHTQVLAEERVERTARGLL LRGLRRQDSGVYLCVAVEQGFSQPLRRLVLHVLSAAQAERLARAEEAAAPAPPGPKLWYRDFLQLVEPGG GGGANSLRMCRPQPGHHSVAADSRRKGRNRRMHVSELRAERGPRSAAHW
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