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Report for CCDS52817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52817.1 Public Mus musculus 9 Arih1 23 108 98 CCDS HistoryNCBI Gene:23806Re-query CCDS DB by CCDS ID:52817.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171975.7 ENSMUSP00000126531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171975.7Link to Ensembl Protein Viewer:ENSMUSP00000126531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171975Re-query CCDS DB by Protein ID:ENSMUSP00000126531
Original member Current member NCBI NM_019927.2 NP_064311.2 Accepted alive Link to Nucleotide Sequence:NM_019927.2Link to Protein Sequence:NP_064311.2Re-query CCDS DB by Nucleotide ID:NM_019927Re-query CCDS DB by Protein ID:NP_064311Link to BLAST:NP_064311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064311.2 555 Q9Z1K5 555 100% 0 0

Chromosomal Locations for CCDS 52817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59393294 59393378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59394878 59394990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59396351 59396611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59403368 59403425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59405725 59405855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59407876 59407947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59408375 59408417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59412425 59412531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59414770 59414836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59426123 59426178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59426614 59426706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59436771 59436915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59454402 59454469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59485979 59486347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGACTCGGACGAGGGCTACAACTACGAGTTCGACGAGGACGAGGAGTGCAGCGAGGAGGACAGCGGCG
CC
GAGGAGGAGGAGGACGACGACGAGGACGAGCCGGACGATGATAACCTGGATCTGGGCGAGGTGGAGCT
G
GTGGAGCCCGGGCTGGGCGTCGGCGGGGAGCGAGACGGACTGCTGTGCGGGGAGACTGGCGGTGGCGGC
GGC
AGCGCTCTGGGTCCGGGAGGCGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCCCGGGACACGAGCAGG
AG
GAGGATTACCGCTACGAGGTGCTCACGGCCGAACAGATCCTGCAGCACATGGTGGAATGTATCCGGGA
G
GTCAACGAGGTCATCCAGAATCCAGCAACTATCACGAGAATACTCCTTAGCCACTTCAATTGGGATAAA
GAG
AAGCTAATGGAAAGGTACTTTGATGGAAACCTGGAGAAGCTCTTTGCTGAGTGTCATGTAATTAATC
CA
AGTAAAAAGTCTCGAACTCGCCAGATGAATACAAGGTCATCGGCACAGGATATGCCGTGTCAGATCTG
C
TACTTGAACTACCCTAACTCGTATTTTACTGGCCTTGAATGTGGACATAAGTTTTGTATGCAGTGCTGG
AGT
GAATATTTAACTACAAAAATAATGGAGGAAGGCATGGGGCAGACTATTTCGTGTCCTGCGCATGGTT
GT
GATATCTTAGTGGATGACAACACAGTTATGCGCCTGATCACAGATTCCAAAGTTAAGTTAAAATATCA
A
CATTTAATAACAAATAGCTTTGTAGAGTGCAACCGACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCAC
CAT
GTTGTTAAAGTCCAGTATCCTGATGCAAAACCAGTTCGCTGCAAATGTGGCCGCCAGTTTTGCTTTA
AC
TGTGGTGAAAATTGGCATGATCCAGTTAAATGTAAGTGGTTGAAGAAGTGGATTAAAAAGTGTGATGA
T
GACAGTGAAACTTCTAATTGGATTGCAGCTAACACAAAGGAATGTCCCAAATGCCATGTCACAATTGAG
AAG
GATGGCGGTTGTAATCACATGGTCTGTCGTAACCAGAACTGTAAAGCAGAATTTTGCTGGGTGTGTC
TT
GGCCCTTGGGAACCGCATGGATCTGCCTGGTACAACTGTAACCGCTATAATGAGGATGATGCAAAGGC
A
GCAAGAGATGCCCAAGAGCGATCTAGGGCGGCCCTGCAGAGATACCTGTTCTACTGTAATCGCTATATG
AAC
CACATGCAGAGTCTACGCTTCGAGCATAAGCTGTATGCTCAGGTGAAACAGAAGATGGAGGAGATGC
AG
CAGCACAACATGTCCTGGATCGAGGTGCAGTTCCTGAAGAAAGCAGTTGATGTCCTCTGCCAGTGTCG
T
GCCACACTCATGTACACTTATGTCTTCGCTTTCTACCTCAAAAAGAATAACCAGTCCATTATCTTTGAG
AAT
AATCAAGCAGATCTAGAAAATGCCACAGAGGTGCTTTCGGGCTACCTTGAACGAGATATTTCCCAAG
AT
TCTCTGCAAGATATAAAGCAGAAAGTCCAAGATAAGTACAGATACTGTGAGAGTCGACGAAGGGTTTT
G
TTACAGCATGTGCATGAAGGCTATGAAAAAGATCTGTGGGAGTACATTGAGGACTGA


Translation (555 aa):
MDSDEGYNYEFDEDEECSEEDSGAEEEEDDDEDEPDDDNLDLGEVELVEPGLGVGGERDGLLCGETGGGG
G
SALGPGGGGGGGGGGGGPGHEQEEDYRYEVLTAEQILQHMVECIREVNEVIQ
NPATITRILLSHFNWDK
E
KLME
RYFDGNLEKLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGLECGHKFCMQCW
S
EYLTTKIMEEGMGQ
TISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCH
H
VVKVQYPDAKPVRCKCGRQF
CFNCGENWHDPVKCKWLKKWIKKCDDDSETSNWIAANTKECPKCHVTIE
K
DGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSA
WYNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYM
N
HMQSLRFEHKLYAQVKQKMEEMQQHNMSWIEVQFLKKAVDVLCQCRATLMYTYVFAFYLKKNNQSIIFE

N
NQADLENATEVLSGYLERDISQDSLQDIKQKVQDKY
RYCESRRRVLLQHVHEGYEKDLWEYIED



Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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