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Report for CCDS27922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27922.1 Public Mus musculus 16 Dnaja3 23 108 98 CCDS HistoryNCBI Gene:83945Re-query CCDS DB by CCDS ID:27922.1Re-query CCDS DB by GeneID:83945See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060067.11 ENSMUSP00000053842.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060067.11Link to Ensembl Protein Viewer:ENSMUSP00000053842.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060067Re-query CCDS DB by Protein ID:ENSMUSP00000053842
Original member Current member NCBI NM_023646.4 NP_076135.3 Accepted alive Link to Nucleotide Sequence:NM_023646.4Link to Protein Sequence:NP_076135.3Re-query CCDS DB by Nucleotide ID:NM_023646Re-query CCDS DB by Protein ID:NP_076135Link to BLAST:NP_076135.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076135.3 480 Q99M87-1 480 100% 0 0

Chromosomal Locations for CCDS 27922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4684134 4684344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4687237 4687370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4689981 4690064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4693212 4693412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4694364 4694516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4696389 4696536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4697251 4697315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4699749 4699877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4701169 4701284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4702211 4702308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4705844 4705947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGCTGCGTGGTGTTCCCCACGCTGGTTGAGGGTGGCAGTGGGGACTCCCCGGCTGCCGGCTGCAGCGG
GGAGAGGGGTCCAGCAGCCCCAGGGGGGCGTAGTGGCAACATCCCTGTGTCGCAAGCTGTGCGTCTCTGC
CTTCGGGCTTTCCATGGGCGCTCACGGCCCCCGGGCGCTGCTGACATTGAGACCCGGTGTCCGCCTCACA
GGAACAAAAAGTTTCCCTTTTGTTTGTACCACCTCTTTCCACACAAGTGCTTCTTTGGCCAAAGATGATT
ATTACCAGATCCTGGGAGTGCCCCGAAATGCCAGCCAGAAAGATATCAAGAAAGCCTATTATCAGCTTGC
CAAGAAATATCATCCAGACACAAATAAGGATGATCCCAAAGCCAAGGAGAAGTTTTCCCAGCTGGCAGAA
GCTTATGAGGTGTTGAGCGATGAAGTGAAGAGGAAGCAGTATGACGCTTACGGCTCTGCTGGCTTTGACC
CTGGCACCAGCAGCTCTGGGCAGGGCTACTGGAGAGGAGGTCCCTCTGTTGACCCCGAGGAGTTGTTCAG
GAAGATCTTTGGGGAGTTCTCATCTTCTCCTTTTGGTGATTTCCAGAATGTGTTTGATCAGCCTCAGGAA
TACATCATGGAATTGACATTCAATCAAGCTGCCAAGGGTGTCAACAAAGAGTTCACTGTGAACATTATGG
ATACCTGTGAGCGCTGTGACGGCAAGGGGAACGAGCCTGGAACCAAAGTGCAGCATTGCCATTACTGTGG
CGGCTCGGGCATGGAAACTATCAATACAGGGCCTTTTGTGATGCGTTCCACATGTCGGAGATGTGGTGGC
CGGGGCTCCATCATCACAAATCCCTGTGTGGTCTGCAGGGGAGCAGGACAAGCCAAGCAGAAGAAGCGCG
TGACAATTCCTGTGCCTGCAGGAGTTGAAGATGGTCAGACTGTAAGGATGCCAGTGGGAAAACGAGAAAT
TTTTGTCACATTCAGGGTGCAGAAAAGCCCTGTGTTCCGGAGGGACGGTGCAGACATCCACTCGGACCTC
TTTATTTCAATAGCTCAAGCTATTCTTGGGGGCACAGCCAAAGCCCAGGGCCTGTATGAGACAATCAATG
TGACGATCCCTGCAGGGATTCAGACAGACCAGAAGATTCGTTTGACTGGAAAAGGCATCCCCCGGATTAA
TAGCTATGGCTATGGTGACCACTACATTCACATCAAGATCAGAGTTCCAAAGAGGCTGAGCAGTAGGCAG
CAGAACCTGATCCTGAGCTATGCCGAGGATGAGACTGACGTGGAGGGGACGGTTAATGGAGTCACCCACA
CAAGCACTGGTGGCAGAACCATGGATAGCTCCGCAGGAAGCAAGGATAGGCGAGAGGCTGGGGAGGACAA
TGAGGGATTCCTTTCCAAACTTAAGAAAATATTTACTTCCTGA

Translation (480 aa):
MAAWCSPRWLRVAVGTPRLPAAAGRGVQQPQGGVVATSLCRKLCVSAFGLSMGAHGPRALLTLRPGVRLT
GTKSFPFVCTTSFHTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAE
AYEVLSDEVKRKQYDAYGSAGFDPGTSSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGDFQNVFDQPQE
YIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGG
RGSIITNPCVVCRGAGQAKQKKRVTIPVPAGVEDGQTVRMPVGKREIFVTFRVQKSPVFRRDGADIHSDL
FISIAQAILGGTAKAQGLYETINVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQ
QNLILSYAEDETDVEGTVNGVTHTSTGGRTMDSSAGSKDRREAGEDNEGFLSKLKKIFTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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