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Report for CCDS16993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16993.1 Public Mus musculus 2 Dhx35 23 108 98 CCDS HistoryNCBI Gene:71715Re-query CCDS DB by CCDS ID:16993.1Re-query CCDS DB by GeneID:71715See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029186.13 ENSMUSP00000029186.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029186.13Link to Ensembl Protein Viewer:ENSMUSP00000029186.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029186Re-query CCDS DB by Protein ID:ENSMUSP00000029186
Original member NCBI NM_145742.2 NP_665685.1 Updated not alive Link to Nucleotide Sequence:NM_145742.2Link to Protein Sequence:NP_665685.1Re-query CCDS DB by Nucleotide ID:NM_145742Re-query CCDS DB by Protein ID:NP_665685
Current member NCBI NM_145742.3 NP_665685.1 Accepted alive Link to Nucleotide Sequence:NM_145742.3Link to Protein Sequence:NP_665685.1Re-query CCDS DB by Nucleotide ID:NM_145742Re-query CCDS DB by Protein ID:NP_665685Link to BLAST:NP_665685.1

Chromosomal Locations for CCDS 16993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158794889 158794928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158801375 158801508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158806398 158806490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158806923 158807000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158815430 158815534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158817363 158817424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158818262 158818331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158820386 158820445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158826305 158826417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158827903 158827999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158829503 158829661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158831662 158831872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158834870 158834994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158836641 158836695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158840551 158840646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158842305 158842399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158842856 158842933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158844078 158844207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158846908 158846989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158851711 158851822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158857080 158857124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGGCTGCGCCCTTGGGACCAGTGAAATTCTGGAAACCGGGTACAGAAGGGCCAGGTGTCAGCATTTCTG
AAGAGAGACAAAGTGTCACCGAGAACTCTGGGACAACCATCATTTACAATCCCTACGCTGCCCTTTCTAT
AGAGCAGCAGCGGCAGAAGCTGCCCGTGTTCAAGCTTAGGAACCACATTTTGTACTTGGTAGAAAACTAT
CAGACCGTGGTGATTGTTGGAGAAACAGGATGTGGGAAGAGCACCCAGATTCCACAGTACCTGGCAGAAG
CTGGCTGGACAGCGGAAGGACGAGTGGTCGGAGTGACCCAGCCTCGCAGAGTGGCTGCCGTGACGGTTGC
AGGCCGAGTAGCTGATGAAAGGGGTGCAGTGCTGGGCCATGAAGTGGGCTACTGTATCCGCTTCGATGAC
TGCACCGACCCACTGGCCACCAGAATCAAGTTCCTTACAGATGGCATGCTGGTCAGAGAAATGATGGTGG
ATCCGCTGTTAACAAAATATAGTGTCATCATGCTGGATGAAGCCCACGAGAGGACCTTGTACACGGACAT
TGCCATTGGCTTGCTGAAGAAGATTCAGAAAAAGCGAGGGGATCTTCGCTTGATTGTGGCCTCAGCCACT
CTGGACGCAGAGAAATTTCGAGATTTCTTTAACCAGAATGAGACCAGTGACCCAGCCAGAGATACCTCTG
TGACGCTCACAGTGGAAGGACGGACATTTCCAGTGGATATCTTTTACCTACAAAGTCCTGTTCCAGATTA
TATCAAGGCAACTGTGGACACCGTGGTAAAAATTCATCAGACAGAAGGAGATGGAGACATACTAGCCTTT
CTTACTGGCCAGGAAGAAGTAGAGACTGTTGTGTCCATGTTGATCGAGCAGGCCCGGGCGCTGGCTCGCA
CTGGGATGAAGAAACACCTCCGGGTCCTCCCCATGTATGCAGGACTGCCTTCTTTTGAGCAGATGAAGGT
GTTTGAAAGGGTGTCACACAGCGTCAGGAAGGTGATCGTGGCCACCAATGTGGCAGAGACTTCCATCACA
ATCAGTGGCATTGTGTATGTGATTGACTGTGGCTTTATGAAGCTGCGAGCCTACAACCCCAGGACAGCTA
TTGAATGCTTGGTGGTGGTACCAGTGTCTCAGGCGTCAGCCAATCAGCGGGCAGGACGTGGTGGGCGCAA
CCGCTCGGGAAAGTGTTATCGCCTTTACACAGAGGAAGCCTTTGACCAGCTACCTCAGTCCACCGTCCCT
GAGATGCAGCGCAGCAATTTGGCCCCCGTCATCCTGCAGCTAAAAGCCCTAGGGATAGACAATGTCCTCA
GGTTCCACTTCATGTCTCCCCCGCCAGCACAGTCGATGGTTCAAGCCTTGGAGCTGCTCTATGCTCTCGG
AGGTCTGGACAAAGACTGTCGCCTAACTGAGCCTCTTGGCATGAGAATTGCAGAGTTTCCTCTGAACCCC
ATGTTTGCCAAGATGCTGCTGGAATCAGGGAACTTCGGCTGTTCTCAGGAGGTCCTGAGTATCGCCGCCA
TGATGCAGATCCAGAATGTCTTCGTGTTCCCCTCAAACCAGAAGTCTCAGGCAACTCGAGTGCACCGGAA
ATTTGCTGTGGAAGAGGGTGACCATCTCACCATGCTCAATGTGTATGAAGCGTTTATCAAACACAACAAG
AGCTCACAGTGGTGTCAGGAGCATTTCCTGAATTACAAGGGTCTTGTCAGAGCTGCCACCGTGAGAGACC
AGTTGAAAAAGCTCCTTGTCAAGTTCCAGGTGCCCAAGGTGTCCAGCGAAGGTGACCCGGATCCAGTCCT
GAGGTGCATCGTGTCGGGGTTCTTTGCGAATGCAGCCCGGTTTCACTCCAGTGGAGCCTATCGGGTTATC
TACAATGAAGTAATACAGACCTCCAAGTATTACATGCGAGATGTGACCGCCATAGAATCTGCTTGGCTGC
TGGAGCTGGCTCCCCACTTTTATCAACAAGGAACGCACCTGTCCCTGAAAGCCAAAAGGGCCAAGGTCCA
AGATCAGTGA

Translation (679 aa):
MAAPLGPVKFWKPGTEGPGVSISEERQSVTENSGTTIIYNPYAALSIEQQRQKLPVFKLRNHILYLVENY
QTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVADERGAVLGHEVGYCIRFDD
CTDPLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASAT
LDAEKFRDFFNQNETSDPARDTSVTLTVEGRTFPVDIFYLQSPVPDYIKATVDTVVKIHQTEGDGDILAF
LTGQEEVETVVSMLIEQARALARTGMKKHLRVLPMYAGLPSFEQMKVFERVSHSVRKVIVATNVAETSIT
ISGIVYVIDCGFMKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRNRSGKCYRLYTEEAFDQLPQSTVP
EMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKDCRLTEPLGMRIAEFPLNP
MFAKMLLESGNFGCSQEVLSIAAMMQIQNVFVFPSNQKSQATRVHRKFAVEEGDHLTMLNVYEAFIKHNK
SSQWCQEHFLNYKGLVRAATVRDQLKKLLVKFQVPKVSSEGDPDPVLRCIVSGFFANAARFHSSGAYRVI
YNEVIQTSKYYMRDVTAIESAWLLELAPHFYQQGTHLSLKAKRAKVQDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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