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Report for CCDS71211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71211.1 Public Mus musculus 2 Cdh26 23 108 98 CCDS HistoryNCBI Gene:381409Re-query CCDS DB by CCDS ID:71211.1Re-query CCDS DB by GeneID:381409See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108912.8 ENSMUSP00000104540.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108912.8Link to Ensembl Protein Viewer:ENSMUSP00000104540.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108912Re-query CCDS DB by Protein ID:ENSMUSP00000104540
Original member NCBI NM_001291189.1 NP_001278118.1 Updated not alive Link to Nucleotide Sequence:NM_001291189.1Link to Protein Sequence:NP_001278118.1Re-query CCDS DB by Nucleotide ID:NM_001291189Re-query CCDS DB by Protein ID:NP_001278118
Current member NCBI NM_001291189.2 NP_001278118.1 Accepted alive Link to Nucleotide Sequence:NM_001291189.2Link to Protein Sequence:NP_001278118.1Re-query CCDS DB by Nucleotide ID:NM_001291189Re-query CCDS DB by Protein ID:NP_001278118Link to BLAST:NP_001278118.1

Chromosomal Locations for CCDS 71211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 178430788 178430838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178441393 178441497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178449806 178449967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178457428 178457575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178460056 178460222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178460675 178460803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178462586 178462771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178466559 178466827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178468133 178468275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178470009 178470254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178471584 178471799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178472322 178472452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178481620 178481697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 178486745 178486948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGACACCAGAGGCTGTGCCTGGTTGCTGCTGCTGCTGTCATTACCGCAGGGACAGAGCCACCAGCCTC
TACATCGATCCAAGAGAAGATGGGTTCTCACCACCCTGGAACTGCAGGAGGAAGACCCAGGGCCCTTTCC
TAAACTGGTTGGGGAGCTCTTCAATAATATGTCAAACAATGTGTCACTGATATATTTAATCAGAGGACCT
GGTGTGGACGAATTTCCAGAGATTGGTTTATTCTCTATAGAAGATCACCAGAGTGGAAAAATATATGTTC
ACCGCCCTGTCGATCGAGAAGTGACACCGTCTTTTATGGTGCACTTTGATGCCGTAGATCGATCCACAGG
GAAAGTTGTGGATGAATCCCTGATTTTCAACATTAGAATCAGAGATGTGAATGACCATGCACCCCAGTTT
CCTGAGAAGGAATTTAACATCAGTGTGAAAGAGAGCCAAGCCGCAGGTCAACCTATTTTTCAGTTGTTAA
CGGTCGATTTGGACCAAGAAAACACTCCAAACTCTCAAGTCCTTTATTTCCTCGTCTCTCAAACGCCATT
ACTGAGGGAAAGTGGCTTTCGGATTGATCTCATCAGCGGGGAAGTGCGACTCTCGGGATGCTTACATTAT
GAGACTGCTCCTCTGTTCACACTGATCGTCAGAGCAAGTGATTGTGGAGAGCCATCCCTGACATCCACGG
CCACCATTCATGTCAGTGTGGAAGACAGCAACAACCACATGCCCACATTTATGGAAGACCGTTATGAGAT
TCGGATTTCTGAAGGTCAAGTCGAACAGGGTGTGTTGTATCTCCCTGTCCAAGATGGAGATTCTCCATTT
ACACCAGCATGGAGAACACAATTCAACATATGGGATGGCAACGAGGAGGGCCATTTTGATATTGTGACTG
ACCCTGAGACCAACCAAGGGTTGTTAAGTATTATCAAGCCTTTGGATTATGAATCTCAAGTAGCCCATAG
CCTCGTCGTTGTTGTGGAGAATCAGGAGCAGCTCTTCGTTTGTACGGAGGGCCAGCTGCAGCCATTGAGG
AAGGCGATGGCCAGCACCATGGTGAGCGTGCAGGTGCTGGACACCAATGACCCACCAGCCTTTCACCCTC
AGAGCTTCATTGTCAGTGAGGAGGATGGAGCCTGGCCCGCCATCCAGCTGGGATACTTCAATGCTACAGA
CCCAGACAGGGCTGACAGCCAGATAAGATACAAACTGGTTCATGATCCAGAAAATTGGGTGACCGTGGAT
GAGAAGTCAGGAGTGGTGACCACCAAGAAGCAAATAGACCGGGAGTCCCCTCATGTGAATGACAGTTTCT
ATACAATCATCGTCCATGCAGTTGACAACGGCCTTCCCCCGCTGACTGGCACGGGGACTCTGATGCTTTT
CCTATCTGATGTCAACGACAATGCTCCAACCCTCCGGCCCCATTCCCGACACTTGGAGGTCTGTGAGTCG
GCTGGGAGCCAGCCCCTGCTGATAGAAGCTGAGGATGCAGATCTGGACCCCTACGCTGACCCCTTTACTT
TTGATTTGGACAATGCTCAGGGAGACGTGGAAGAGACTTGGATGCTGAGGACAAAGCAGGGGGAAGGCCA
CTCTGCTGAACTCACAATGCTGAGAAGCGTCCCGCCCGGGGATTACTTGGTGCCACTCTTCATAGCTGAC
AGACAGGGCCTCGCCCAGAAGCAGACAGTCCACGTGAGAATCTGCTCCTGCCGCAGTGGCTCTGAATGTG
AGGAGCCTTCGGACACATGGCTCCTGTGGTGGGCCCTGTCCCCAGTTGGTGCAGCACTTATGGTTCTGTC
AGCTGCTCTCCTTTGCCTGCTGCGGTGCTCCTGCACATTTGGACCCAAGAGGCTCAGAGGCTTCATCCCA
AGTGACAGTGGCCACCAGACACTGATTGTGTATAACGAGGAAAGCAAAGTCCCTTCAGCCCAGGTCTATC
TGGATCGTATGGTACCCAGACAGCAGCCCCTGCAGCTGCTGGAAGGAAGAGTGGTGGAGGCATGGAGCCA
GAAGCTCCAGAGTATTGATGTTCTGGAAGGTGACACTGGCTACCTGCCTCATGTTTACAGAGAGGAGGGC
GAGTGTGAAGGAGCTGAGACCCTCAGCTCTCTAACCTTCTTGGAGCAGGACCTCTCCCCCAAGTTGCTGG
GCTGCTCGGGCTCAAAATCTACTCCCTCTGAAGCAATGTGTTTTACATCAAGAGTTCCTTCATAA

Translation (744 aa):
MDTRGCAWLLLLLSLPQGQSHQPLHRSKRRWVLTTLELQEEDPGPFPKLVGELFNNMSNNVSLIYLIRGP
GVDEFPEIGLFSIEDHQSGKIYVHRPVDREVTPSFMVHFDAVDRSTGKVVDESLIFNIRIRDVNDHAPQF
PEKEFNISVKESQAAGQPIFQLLTVDLDQENTPNSQVLYFLVSQTPLLRESGFRIDLISGEVRLSGCLHY
ETAPLFTLIVRASDCGEPSLTSTATIHVSVEDSNNHMPTFMEDRYEIRISEGQVEQGVLYLPVQDGDSPF
TPAWRTQFNIWDGNEEGHFDIVTDPETNQGLLSIIKPLDYESQVAHSLVVVVENQEQLFVCTEGQLQPLR
KAMASTMVSVQVLDTNDPPAFHPQSFIVSEEDGAWPAIQLGYFNATDPDRADSQIRYKLVHDPENWVTVD
EKSGVVTTKKQIDRESPHVNDSFYTIIVHAVDNGLPPLTGTGTLMLFLSDVNDNAPTLRPHSRHLEVCES
AGSQPLLIEAEDADLDPYADPFTFDLDNAQGDVEETWMLRTKQGEGHSAELTMLRSVPPGDYLVPLFIAD
RQGLAQKQTVHVRICSCRSGSECEEPSDTWLLWWALSPVGAALMVLSAALLCLLRCSCTFGPKRLRGFIP
SDSGHQTLIVYNEESKVPSAQVYLDRMVPRQQPLQLLEGRVVEAWSQKLQSIDVLEGDTGYLPHVYREEG
ECEGAETLSSLTFLEQDLSPKLLGCSGSKSTPSEAMCFTSRVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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