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Report for CCDS84809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84809.1 Public Mus musculus 4 Rap1gap 23 108 98 CCDS HistoryNCBI Gene:110351Re-query CCDS DB by CCDS ID:84809.1Re-query CCDS DB by GeneID:110351See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84809.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097837.10 ENSMUSP00000095448.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097837.10Link to Ensembl Protein Viewer:ENSMUSP00000095448.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000097837Re-query CCDS DB by Protein ID:ENSMUSP00000095448
Original member NCBI NM_001331215.1 NP_001318144.1 Updated not alive Link to Nucleotide Sequence:NM_001331215.1Link to Protein Sequence:NP_001318144.1Re-query CCDS DB by Nucleotide ID:NM_001331215Re-query CCDS DB by Protein ID:NP_001318144
Current member NCBI NM_001331215.2 NP_001318144.1 Accepted alive Link to Nucleotide Sequence:NM_001331215.2Link to Protein Sequence:NP_001318144.1Re-query CCDS DB by Nucleotide ID:NM_001331215Re-query CCDS DB by Protein ID:NP_001318144Link to BLAST:NP_001318144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318144.1 694 A2ALS5-3 694 100% 0 0

Chromosomal Locations for CCDS 84809.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137707586 137707660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137709887 137709922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137710615 137710662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137711648 137711686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137712015 137712200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137715742 137715845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137716085 137716163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137716520 137716573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137717398 137717481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137717694 137717794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137717915 137718044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137718875 137719030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137719328 137719399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137719910 137719996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137720294 137720431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137721826 137721957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137724692 137724801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137725550 137725663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137726952 137727075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137727677 137727779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137728260 137728363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137728528 137728536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGGCGCAGCCGCGGCCCCCAGCGCCCCATGGCCGTCCGCGGAGGGGCTCGTTGCCGGCGGGGGCCGGCT
GGCAGAACACAGATCTGTTTGAGATGATTGAAAAGATGCAGGGAAGCAGGATGGATGAACAGCGATGCTC
CTTCCCGCCACCCCTCAAGACGGAGGAGGACTACATTCCCTACCCAAGTGTCCATGAGGTTTTGGGGCGA
GAAGGGCCCTTCCCCCTCATCCTACTGCCCCAGTTTGGGGGCTACTGGATTGAAGGCACCAACCATGAAA
TCAGCAGCCTCCCTGAGACAGAGCCGCTGCAGTCTCCCACCACCAAGGTCAAGCTGGAGTGCAACCCCAC
AGCCCGAATCTACCGGAAGCACTTTCTGGGCAAGGAGCACTTCAATTACTATTCACTGGACACTGCTCTC
GGCCACCTGGTATTCTCGCTCAAGTATGATGTCATCGGGGATCAGGAGCACCTGCGGCTGTTGCTTAGGA
CCAAGTGTCGGACCCACCACGATGTCATCCCCATCTCCTGCCTCACCGAGTTCCCCAACGTGGTCCAGAT
GGCAAAGCTGGTATGTGAGGATGTCAATGTGGATCGATTCTACCCCGTGCTTTACCCTAAGGCCTCCAGG
CTCATTGTCACCTTTGACGAACATGTTATCAGCAATAACTTCAAGTTTGGAGTCATTTATCAGAAGCTTG
GCCAGACCTCTGAGGAAGAACTATTCAGTACCAACGAGGAAAGTCCTGCCTTCGTGGAATTCCTGGAGTT
TCTGGGCCAGAAAGTGAAATTGCAGGATTTCAAGGGGTTCCGAGGAGGCCTTGACGTGACTCACGGGCAG
ACGGGGACCGAGTCCGTATACTGCAACTTCCGCAACAAGGAGATCATGTTTCACGTGTCCACCAAGCTGC
CATACACAGAAGGGGACGCTCAGCAGTTGCAGCGGAAGCGGCATATCGGGAACGACATCGTCGCTGTGGT
CTTCCAGGACGAAAACACGCCCTTCGTGCCAGACATGATTGCATCCAACTTTCTGCATGCCTATGTGGTG
GTGCAGGCAGAGGGGGGTGGCCCCGATGGCCCCCTCTACAAGGTCTCTGTCACTGCTAGAGACGATGTGC
CCTTTTTTGGGCCTCCCCTCCCGGATCCTGCTGTGTTTAGGAAGGGGCCTGAGTTCCAGGAATTTCTGCT
GACGAAGTTGATCAATGCCGAGTATGCGTGTTACAAAGCAGAGAAGTTTGCCAAACTGGAGGAGCGGACG
CGTGCCGCCCTTCTTGAGACGCTCTACGAGGAGCTCCATATTCACAGCCAGTCCATGATGGGCCTCGGCG
GCGACGACGACAAGATGGAGAACGGCAGCGGTGGGGGTGGCTTCTTCGAGTCTTTCAAGAGGGTCATCCG
GAGCCGGAGTCAGTCCATGGATGCCATGGGACTGAGCAACAAGAAACCCAACACCGTGTCAACTAGCCAC
AGTGGGAGCTTCACCCCCAACAACCCTGACCTGGCCAAGGCAGCCGGCATATCCCTGATTGTCCCTGGAA
AAAGCCCCACAAGGAAGAAGTCTGGTCCGTTTGGCTCACGCCGCAGCAGTGCCATTGGCATCGAGAACAT
CCAGGAGGTTCAGGAGAAGAGGGAGAGCCCTCCAGCTGGCCAGAAGACCCCAGACAGCGGGCATGTCTCA
CAAGAGCCCAAGTCAGAGAACTCATCCACTCAGAGCTCCCCAGAGATGCCCACGACCAAGAACAGAGTGG
AGTCGGCTGCCCAGAGAACGGAAGTGCTGCAGGGCTTCTCCAGATCTTCCTCCAGCGCCAGCAGCTTCAC
CAGCGTGGTGGAGGAGACGGAGGGCGTAGACGGGGATGATACAGGCCTGGAGAGCGTGTCGTCCTCAGGA
ACTCCCCATAAGCGGGACTCCTTCCTCTACAGCACATGGCTGGACGACAGCGTGAGCACCACGAGCGGGG
GCAGCTCCCCAGGCCTCACACGGTCACCCCACCCAGACGTCGGCAAGTCGGGGGACCCTGCGTGTCCCGA
GATCAAGATCCAACTGGAAACATCTGAGCAGCACACACCCCAGATGGGCTGCTAG

Translation (694 aa):
MAQPRPPAPHGRPRRGSLPAGAGWQNTDLFEMIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLGR
EGPFPLILLPQFGGYWIEGTNHEISSLPETEPLQSPTTKVKLECNPTARIYRKHFLGKEHFNYYSLDTAL
GHLVFSLKYDVIGDQEHLRLLLRTKCRTHHDVIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASR
LIVTFDEHVISNNFKFGVIYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQ
TGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVV
VQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERT
RAALLETLYEELHIHSQSMMGLGGDDDKMENGSGGGGFFESFKRVIRSRSQSMDAMGLSNKKPNTVSTSH
SGSFTPNNPDLAKAAGISLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVS
QEPKSENSSTQSSPEMPTTKNRVESAAQRTEVLQGFSRSSSSASSFTSVVEETEGVDGDDTGLESVSSSG
TPHKRDSFLYSTWLDDSVSTTSGGSSPGLTRSPHPDVGKSGDPACPEIKIQLETSEQHTPQMGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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