NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51758.1 Public Mus musculus 6 Fam131b 23 108 98 CCDS HistoryNCBI Gene:76156Re-query CCDS DB by CCDS ID:51758.1Re-query CCDS DB by GeneID:76156See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031891.14 ENSMUSP00000031891.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031891.14Link to Ensembl Protein Viewer:ENSMUSP00000031891.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031891Re-query CCDS DB by Protein ID:ENSMUSP00000031891
Original member Current member NCBI NM_001113327.2 NP_001106798.1 Accepted alive Link to Nucleotide Sequence:NM_001113327.2Link to Protein Sequence:NP_001106798.1Re-query CCDS DB by Nucleotide ID:NM_001113327Re-query CCDS DB by Protein ID:NP_001106798Link to BLAST:NP_001106798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106798.1 348 Q3TY60-2 348 100% 0 0

Chromosomal Locations for CCDS 51758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42318159 42318631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42318851 42318994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42320788 42320985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42321250 42321343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42321907 42322016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42324442 42324469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGGCTGCATCGGCTCGCGGACTGTGGGGAACGAAGTGATTGCCGTGGACTGGAAAGGCCTCAAGGATG
TTGATCAGATCAACATGGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCATCGGCCTTCGACAGAGCT
TTCCATGGAGGACACCACTTCCATCCTTCCGAAGCTTAAGCGAAACTCTAATGCCTATGGCATTGGGGCC
CTGGCCAAGTCATCATTCTCAGGGATCTCGAGGAGCATGAAGGACCATGTGACAAAGCCTACCGCCATGG
GCCAAGGCCGGGTGGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACA
TAGCCATGAGGCTGTGCGCAGGGATACAGACGCCTACTCTGACCTCAGTGATGGCGAGAAGGAGGCACGT
TTCCTAGCAGGTGTCATGGAACAGTTTGCTATTTCTGAGGCTACACTTATGGCTTGGTCTTCCATGGATG
GTGAGGACATGAGTGTCAATTCTACCCAGGAGCCACTGGACTGCAACTACAGTGACAACTACCAGGAGCT
GATGGAAAGTCAGGATGCACTAGCTCAAGCCCCAATGGATGGATGGCCTCACTCCTACGTGTCACAGGGG
ATGTACTGTCTGGGGTCATCTGACGCCTGGGAAGCAAGTGATCAGTCCCTCATTGCATCTCCAGCTACCG
GATCCTATCTTGGCCCTGCATTTGATGACTCACAGCCGAGCCTGCATGACATGGGGCCTTCCCAACCTGC
TTCAGGATACTCTGCTCAGGAGCCTCCACCTTTGTTGGGGGTAGACACTGACTGGGCATCAGAGGTTGGT
GGGGTGGAACTGGCCAGGGGACCTGTAGAGGAAGAGAAGAGACCACTGGCCCCTGAGGAGGAAGAAGATG
CAGGATGCCGGGATCTGGAGTCACTTTCCCCACGAGAGGACCCAGAGATGTCCACTGCTCTCAGCCGGAA
GGTGTCTGATGTCACATCCTCAGGTGTGCAGTCCTTTGATGAGGAGGAAGGGGATGCCAACAACTAG

Translation (348 aa):
MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTELSMEDTTSILPKLKRNSNAYGIGA
LAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPTIQPQHSHEAVRRDTDAYSDLSDGEKEAR
FLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNYSDNYQELMESQDALAQAPMDGWPHSYVSQG
MYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHDMGPSQPASGYSAQEPPPLLGVDTDWASEVG
GVELARGPVEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGDANN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH