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Report for CCDS20469.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
20469.1 |
Public |
Mus musculus |
6 |
Csgalnact2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:78752](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:20469.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:78752](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 20469.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000049344.14 |
ENSMUSP00000039819.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000049344.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000039819.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000049344](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000039819](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362149.1 |
NP_001349078.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362149.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349078.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362149](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349078](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349078.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_030165.3 |
NP_084441.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_030165.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_084441.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_030165](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_084441](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_084441.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 20469.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1629 nt): ATGTCTAGAAGAGGATCGATTCTGCACAGCCGGACCCAGTGGCTGCTGTTGGGCCTTGCTTTGCTCTTCA GTTTAGTATTATTTATGTACCTCCTGGAATGTGCCCCCCAGACTGATGGAAATGCTTCTCTTCCTGGTGT TGTTAGAGAAAATTATGGTAAAGAATATTACCAGGCCCTCCTGCAGGAGCAAGAAGAACATTACCAAACC AGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAGATATGAGTGAGAAGATGA GAGCCTTGCAAGAGAGAAAGAAGCTAGGGGCTAACGGCGTAGGCTATCCTGGCAACAGAGAGCAGGCACC CAGTGACCTCTTAGAGTTTCTTCACTCCCAGATCGATAGAGCTGAAGTTAGCGTGGGGGCCAAACTCCCC AGTGAGTATGGAGTCGTTCCCTTTGAAAGTTTTACTTTAATGAAAGTATTTCAGTTGGAAATGGGTCTCA CTCGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAACGAGACGAACTGGTAGAAGTTATTGAAGCTGG CGTGGAGGTCATTAATAATCCTGATGAAGATGATGCACAGGAAGATGAGGAGGGTCCCCTTGGAGAGAAA CTGATATTTAATGAAAATGACTTCATAGAAGGCTATTATCGCACTGAGAGAGATAAAGGCACGCAGTATG AACTGTTTTTTAAGAAAGCAGACCTTATGGAGTACAGACATGTGACCCTCTTCCGCCCTTTTGGACCTCT CATGAAAGTGAAGAATGAACTGATCGACATTACAAGATCAGTTATTAATATCATTGTGCCACTTGCGGAG AGGACAGAGGCGTTTTCACAGTTTATGCAGAACTTCAGAGATGTTTGTATTCATCAAGACAAGAGGATTC ATCTCACCGTTGTGTATTTTGGGAAAGAAGGACTATCTAAAGTCAAGTCTATTCTAGAATCTGTCTCAAG TGAGTCTGATTTTCACAATTACACCTTGGTCTCGTTGGACGAAGAATTTAATCGTGGACGAGGACTAAAT GTGGGTGCCCGAGCTTGGGACAAGGGAGAGGTCTTGATGTTTTTCTGTGATGTTGATATATATTTCTCAG CTGAATTCCTTAACAGCTGCCGGTTAAATGCTGAGCCAGGTAAAAAGGTGTTTTACCCTGTGGTGTTCAG TCTTTACAACCCTGCCATTGTCTATGCCAACCAGGACGTGCCGCCCCCTGTGGAGCAGCAGCTGGTTCAT AAAAAGGACTCTGGTTTTTGGAGAGACTTTGGCTTTGGGATGACCTGTCAATATCAATCGGATTTCCTGA GTGTCGGTGGATTCGACATGGAAGTAAAAGGCTGGGGTGGAGAAGATGTTCATCTTTACCGAAAATACCT ACACGGTGATCTTATTGTGATTCGGACTCCAGTTCCCGGTCTTTTCCACCTCTGGCATGAGAAACATTGT GCAGATGAGCTGACCCCTGAGCAGTACCGAATGTGCATCCAATCCAAAGCCATGAATGAGGCCTCCCACT CTCACCTGGGAATGATGGTTTTCAGGGAGGAGATAGAGATGCATCTTCGCAAACAGGCATACAGAACAAA CAGCGAGACTGCTGGGTAA
Translation (542 aa): MSRRGSILHSRTQWLLLGLALLFSLVLFMYLLECAPQTDGNASLPGVVRENYGKEYYQALLQEQEEHYQT RATSLKRQIAQLKQELQDMSEKMRALQERKKLGANGVGYPGNREQAPSDLLEFLHSQIDRAEVSVGAKLP SEYGVVPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGVEVINNPDEDDAQEDEEGPLGEK LIFNENDFIEGYYRTERDKGTQYELFFKKADLMEYRHVTLFRPFGPLMKVKNELIDITRSVINIIVPLAE RTEAFSQFMQNFRDVCIHQDKRIHLTVVYFGKEGLSKVKSILESVSSESDFHNYTLVSLDEEFNRGRGLN VGARAWDKGEVLMFFCDVDIYFSAEFLNSCRLNAEPGKKVFYPVVFSLYNPAIVYANQDVPPPVEQQLVH KKDSGFWRDFGFGMTCQYQSDFLSVGGFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKHC ADELTPEQYRMCIQSKAMNEASHSHLGMMVFREEIEMHLRKQAYRTNSETAG
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