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Report for CCDS85345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85345.1 Public Mus musculus 7 Map6 23 108 98 CCDS HistoryNCBI Gene:17760Re-query CCDS DB by CCDS ID:85345.1Re-query CCDS DB by GeneID:17760See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000127492.1 ENSMUSP00000146340.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127492.1Link to Ensembl Protein Viewer:ENSMUSP00000146340.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127492Re-query CCDS DB by Protein ID:ENSMUSP00000146340
Original member Current member NCBI NM_001048167.1 NP_001041632.1 Accepted alive Link to Nucleotide Sequence:NM_001048167.1Link to Protein Sequence:NP_001041632.1Re-query CCDS DB by Nucleotide ID:NM_001048167Re-query CCDS DB by Protein ID:NP_001041632Link to BLAST:NP_001041632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041632.1 568 Q7TSJ2-2 568 100% 0 0

Chromosomal Locations for CCDS 85345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99268022 99269313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99315689 99315902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99317472 99317672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGCGTGGCCGTGCATCACAAGGGCCTGCTGCATCGCCCGCTTCTGGAACCAGCTGGACAAGGCGGACA
TTGCGGTGCCGCTGGTTTTCACCAAGTACTCGGAGGCCACCGAACACCCAGGCGCCCCTCCGCAGCCGCC
AGCTCCGCTGCAGCCCGCGTTAGCGCCCCCCTCGCGTGCTGTCGCCATAGAGACGCAGCCAGCCCAGGGA
GAGTCGGATGCAGTTGCCCGGGCAACAGGGCCTGCGCCCGGGCCCAGCGTCGACCGCGAGACTGTAGCCG
CCCCCGGCCGGAGCGGGCTGGGCTTGGGCGCGGCCTCAGCCTCCACTTCCGGCTCAGGCCCCGCGGACTC
GGTGATGCGACAGGACTACCGCGCCTGGAAAGTGCAGCGGCCCGAGCCAAGCTGCCGGCCGCGCAGCGAG
TACCAGCCGTCCGACGCGCCCTTCGAGCGCGAGACCCAGTACCAGAAGGACTTCCGCGCCTGGCCGCTGC
CCCGGCGCGGGGACCATCCCTGGATCCCCAAGCCGGTGCAAATCCCTGCGACTTCGCAGCCTTCCCAACC
TGTTCTCGGGGTGCCCAAGCGTCGGCCTCAGAGCCAAGAGCGCGGGCCCATGCAACTTTCTGCTGATGCC
CGGGACCCGGAGGGTGCTGGAGGAGCCGGGGTGCTGGCGGCAGGAAAGGCGTCCGGTGTAGACCAGCGCG
ACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGGGCACGAAGAGAAGCCTCTGCC
CCCAGCCCAATCCCAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGAC
ACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGCACGAAGAGAAGCCTCTGCCCC
CAGCCCAATCCCAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTCCGGTGCAGATCAGCGTGACAC
ACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGGAAGGGCACGAGGAGACGCCGCTGCCACCC
GCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTGGTGCAGACGAGCGCGACACGA
GGAGGAAGGCGGGGCCGGCCTGGATGGTGCGTCGCTCGGAGGGGCACGAACAGACACCCGCTGCCCATGC
CCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAGATGCCCTCAACAGGCAAATCCGGGAG
GAGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATGAATTCAGAGCATGGACTGACATCAAGCCTGTGA
AACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAAGATGGTTCATGAGACCAGCTACAGCGC
CCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACAAGGCCATGGATCGCAGAAGAATACGG
AGCCTCTACAGTGAGCCTTTCAAGGAATGCCCGAAGGTAGAGAAACCTAGTGTTCAGAGTTCCAAACCAA
AAAAGACCTCAACGAGCCATAAACCCCCAAGGAAGGCCAAAGACAAGCAGGTGGTGTCGGGCCAGGCTGC
CAAGAAAAAGACCACAGAGGGCCCCAGTGCTACCAAACCCGACGACAAGGAGCAAAGCAAAGAGATGAAC
AATAAACTGGCTGAGGCGAAAGAGTAA

Translation (568 aa):
MAWPCITRACCIARFWNQLDKADIAVPLVFTKYSEATEHPGAPPQPPAPLQPALAPPSRAVAIETQPAQG
ESDAVARATGPAPGPSVDRETVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSE
YQPSDAPFERETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRD
TRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPP
AQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADALNRQIRE
EVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIR
SLYSEPFKECPKVEKPSVQSSKPKKTSTSHKPPRKAKDKQVVSGQAAKKKTTEGPSATKPDDKEQSKEMN
NKLAEAKE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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