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Report for CCDS40029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40029.1 Public Mus musculus 7 Map6 23 108 98 CCDS HistoryNCBI Gene:17760Re-query CCDS DB by CCDS ID:40029.1Re-query CCDS DB by GeneID:17760See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 40029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107100.2 ENSMUSP00000102717.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107100.2Link to Ensembl Protein Viewer:ENSMUSP00000102717.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107100Re-query CCDS DB by Protein ID:ENSMUSP00000102717
Original member Current member EBI ENSMUST00000208605.1 ENSMUSP00000146897.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208605.1Link to Ensembl Protein Viewer:ENSMUSP00000146897.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208605Re-query CCDS DB by Protein ID:ENSMUSP00000146897
Original member Current member NCBI NM_001043355.2 NP_001036820.2 Accepted alive Link to Nucleotide Sequence:NM_001043355.2Link to Protein Sequence:NP_001036820.2Re-query CCDS DB by Nucleotide ID:NM_001043355Re-query CCDS DB by Protein ID:NP_001036820Link to BLAST:NP_001036820.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036820.2 306 Q7TSJ2-3 306 100% 0 0

Chromosomal Locations for CCDS 40029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99268631 99269313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99315689 99315902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99335985 99336008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGCAACTTTCTGCTGATGCCCGGGACCCGGAGGGTGCTGGAGGAGCCGGGGTGCTGGCGGCAGGAAAGG
CGTCCGGTGTAGACCAGCGCGACACACGTAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAACGAAGG
GCACGAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCG
TCCGGTGCAGATCAGCGTGACACACGCAGGAAGGCAGGGCCAGCATGGATGGTGACTCGCAGCGAAGGGC
ACGAAGAGAAGCCTCTGCCCCCAGCCCAATCCCAGACCCAGGAGGGTGGTCCTGCAGCTGGAAAGGCGTC
CGGTGCAGATCAGCGTGACACACGCAGGAAGGCTGGACCCGCGTGGATGGTGACTCGCACGGAAGGGCAC
GAGGAGACGCCGCTGCCACCCGCCCAGTCTCAGACCCAGGAGGGCGGCCCCGCAGCTGGAAAGGCATCTG
GTGCAGACGAGCGCGACACGAGGAGGAAGGCGGGGCCGGCCTGGATGGTGCGTCGCTCGGAGGGGCACGA
ACAGACACCCGCTGCCCATGCCCAAGGCACAGGGCCTGAAGGAGGCAAGGGGCGCGCGGTGGCAGATGCC
CTCAACAGGCAAATCCGGGAGGAGGTGGCGAGTACAGTAAGCAGCTCTTACAGGAATGAATTCAGAGCAT
GGACTGACATCAAGCCTGTGAAACCCATCAAAGCCAAGCCCCAGTACAAGCCCCCAGATGACAAGATGGT
TCATGAGACCAGCTACAGCGCCCAGTTCAAAGGGGAGGCCAATAAGCCCAGTGCAGCGGACAACAAGGCC
ATGGATCGCAGAAGAATACGGAGCCTCTACAGTGAGCCTTTCAAGGAATGCCCGAAGGAGCCGGGTCAAA
CCCACCAGTGA

Translation (306 aa):
MQLSADARDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKA
SGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGH
EETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA
LNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEANKPSAADNKA
MDRRRIRSLYSEPFKECPKEPGQTHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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