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Report for CCDS52323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52323.1 Public Mus musculus 7 Rab6a 23 108 98 CCDS HistoryNCBI Gene:19346Re-query CCDS DB by CCDS ID:52323.1Re-query CCDS DB by GeneID:19346See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52323.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098252.4 ENSMUSP00000095852.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098252.4Link to Ensembl Protein Viewer:ENSMUSP00000095852.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098252Re-query CCDS DB by Protein ID:ENSMUSP00000095852
Original member NCBI NM_001163663.1 NP_001157135.1 Updated not alive Link to Nucleotide Sequence:NM_001163663.1Link to Protein Sequence:NP_001157135.1Re-query CCDS DB by Nucleotide ID:NM_001163663Re-query CCDS DB by Protein ID:NP_001157135
Current member NCBI NM_001163663.2 NP_001157135.1 Accepted alive Link to Nucleotide Sequence:NM_001163663.2Link to Protein Sequence:NP_001157135.1Re-query CCDS DB by Nucleotide ID:NM_001163663Re-query CCDS DB by Protein ID:NP_001157135Link to BLAST:NP_001157135.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157135.1 208 P35279-2 208 100% 0 0

Chromosomal Locations for CCDS 52323.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100608224 100608293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100626552 100626610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100628404 100628457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100629666 100629771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100631742 100631853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100634645 100634738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100636695 100636761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100639255 100639319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGTCCGCGGGCGGAGACTTCGGGAATCCGCTGAGGAAATTCAAGCTGGTGTTCCTGGGAGAGCAGAGCG
TTGGAAAGACGTCCTTGATCACCCGATTCATGTATGACAGTTTTGACAACACCTATCAGGCAACAATTGG
CATTGACTTCTTATCAAAAACAATGTACTTGGAGGATAGAACCATCAGGCTGCAGCTGTGGGATACTGCG
GGTCAGGAACGTTTCCGTAGCCTCATTCCCAGTTACATCCGTGACTCTGCTGCAGCCGTAGTAGTTTACG
ATATCACAAATGTTAACTCATTCCAGCAAACTACAAAATGGATTGATGATGTCAGAACAGAGAGAGGAAG
TGATGTCATCATCATGCTAGTAGGAAATAAAACAGATCTTGCTGATAAGAGGCAAGTGTCAATTGAGGAG
GGAGAGAGGAAAGCCAAAGAGCTGAATGTTATGTTTATTGAAACCAGTGCAAAAGCAGGATACAATGTAA
AGCAGCTTTTCCGGCGTGTTGCTGCAGCTTTACCTGGAATGGAAAGCACACAGGACAGAAGCAGAGAAGA
CATGATTGACATAAAACTGGAAAAGCCTCAGGAGCAACCAGTCAATGAAGGCGGCTGTTCCTGCTAA

Translation (208 aa):
MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA
GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEE
GERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVNEGGCSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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