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Report for CCDS23248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23248.1 Public Mus musculus 9 Adpgk 23 108 98 CCDS HistoryNCBI Gene:72141Re-query CCDS DB by CCDS ID:23248.1Re-query CCDS DB by GeneID:72141See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217570.1 ENSMUSP00000149882.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217570.1Link to Ensembl Protein Viewer:ENSMUSP00000149882.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217570Re-query CCDS DB by Protein ID:ENSMUSP00000149882
Original member Current member NCBI NM_028121.2 NP_082397.1 Accepted alive Link to Nucleotide Sequence:NM_028121.2Link to Protein Sequence:NP_082397.1Re-query CCDS DB by Nucleotide ID:NM_028121Re-query CCDS DB by Protein ID:NP_082397Link to BLAST:NP_082397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082397.1 496 Q8VDL4-1 496 99.5968% 0 2

Chromosomal Locations for CCDS 23248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59291634 59291866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59297526 59297751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59303489 59303551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59310228 59310348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59313040 59313236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59313753 59313851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59314731 59315282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGCGCTGTGGCGCGGCTCTGCGTGCGCCGGCTTCCTGGCGCTGGCCGTGGGCTGCGTGTTCCTGCTGG
AGCCGGAGCTGCCGGGCACGGCGCTGCGCTCGCTCTGGAGCTCCCTGAGGCTGGGACCCGCGCCAGTGCC
CGTGGGACCTCTGTCCCCGGAGAGCCGGCTGGCAGCCGCTTGGGACGCCCTCATCGCGCAGCCCGCCCGG
CGCTGGCGCCGCGTGGCTGTGGGAGTCAACGCCTGTGTGGATGTGGTAATCTCTGGCGTGAAACTCCTGC
AGGCCCTCGGCCTCAGTCCTGGGAGTGGAAAAGATCATGCTATTCTACACTCGAGAAGTGATCTGGAAGA
AGCCTTCCTCTACTTCATGGGGAAGGGAGCCGCTGCTGAGCGCTTCTTCAGTGATAAAGAGACCTTTCAT
GACATTGCCCAGGCTGCATCTGAGTTTCCAGGAGCTCAGCATTATGTAGGAGGAAATGCTGCTTTAATTG
GACAGAGGTTTGCTGCCAACACAGACTTAAAGGTTCTTCTTTGTGGTCCAATTGGCCCAAAACTGCATGA
ACTTCTTGATGACAATGTGTTTGTTCCACCAGAGTCACTGCAGGAAGAGGATGAGTTCCACCTTATTTTA
GAGTACCTGGCAGGGGAGGAGTGGGGCCCGTTTAAAGCTCCCCATGCCAACCGCTTCATCTTCTCTCACG
ACCTCTCCAACGGGGCCATGAATATGCTGGAGGTGTTTGTGTCTAGCCTGGAGGAGTTCCAGCCTGACCT
GGTGGTCCTTTCTGGATTGCACATGATGGAGGGACAAAGCAAGGAGCTCCAGAGGAAGAGGCTCTTGGAG
GTTGTGACCGCCATTTCTGACATCCCCACTGGTATTCCAGTTCACCTAGAGCTGGCCAGTATGACCAACA
GGGAGCTCATGAGCAGTATTGTGCATCAGCAGGTCTTTCCCACGGTGGCTTCTCTTGGGCTGAATGAACA
GGAGCTGCTGTTTCTCAGCCAGTCGGCATCTGGACCCCATGCTTCTCTCTCCTCCTGGGATGGTGTTCCT
GATGTGGGCATGGTCAGTGACATCCTCTTCTGGATCTTGAAAGAACATGGAAGGAGTGAAAACAGAGCCT
CGGATCTCACCAGGATCCATTTCCACACGCTGGTCTACCACATTCTGGCAACTGTGGACGGACACTGGGC
CAACCAGCTCGCAGCCGTAGCTGCGGGAGCTCGTGTAGCTGGGACACAAGCCTGTGCCACAGAAACCATA
GACACCAACCGAGTGTCTCTAAGAGCACCTCAGGAGTTTACGACATCCCATTTGGAATCCGGTTCCAGGA
TTGTATTGAACCCAGATAAGCCAGTGGTGGAGTGGCACAGGGAGGGAATAACTTTCCACTTCACACCTGT
GTTGGTGTGTAAAGACCCCGTTCGAACTGTAGGCCTTGGTGATGCCATTTCCGCTGAAGGCCTCTTCTAT
TCAGAAGCACGCCCTGATTAG

Translation (496 aa):
MALWRGSACAGFLALAVGCVFLLEPELPGTALRSLWSSLRLGPAPVPVGPLSPESRLAAAWDALIAQPAR
RWRRVAVGVNACVDVVISGVKLLQALGLSPGSGKDHAILHSRSDLEEAFLYFMGKGAAAERFFSDKETFH
DIAQAASEFPGAQHYVGGNAALIGQRFAANTDLKVLLCGPIGPKLHELLDDNVFVPPESLQEEDEFHLIL
EYLAGEEWGPFKAPHANRFIFSHDLSNGAMNMLEVFVSSLEEFQPDLVVLSGLHMMEGQSKELQRKRLLE
VVTAISDIPTGIPVHLELASMTNRELMSSIVHQQVFPTVASLGLNEQELLFLSQSASGPHASLSSWDGVP
DVGMVSDILFWILKEHGRSENRASDLTRIHFHTLVYHILATVDGHWANQLAAVAAGARVAGTQACATETI
DTNRVSLRAPQEFTTSHLESGSRIVLNPDKPVVEWHREGITFHFTPVLVCKDPVRTVGLGDAISAEGLFY
SEARPD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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