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Report for CCDS44445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44445.1 Public Homo sapiens 10 SFTPA1 24 110 108 CCDS HistoryNCBI Gene:653509Re-query CCDS DB by CCDS ID:44445.1Re-query CCDS DB by GeneID:653509See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44445.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398636.8 ENSP00000381633.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398636.8Link to Ensembl Protein Viewer:ENSP00000381633.3Re-query CCDS DB by Nucleotide ID:ENST00000398636Re-query CCDS DB by Protein ID:ENSP00000381633
Original member Current member EBI ENST00000428376.6 ENSP00000411102.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428376.6Link to Ensembl Protein Viewer:ENSP00000411102.2Re-query CCDS DB by Nucleotide ID:ENST00000428376Re-query CCDS DB by Protein ID:ENSP00000411102
Original member Current member NCBI NM_001164644.2 NP_001158116.1 Accepted alive Link to Nucleotide Sequence:NM_001164644.2Link to Protein Sequence:NP_001158116.1Re-query CCDS DB by Nucleotide ID:NM_001164644Re-query CCDS DB by Protein ID:NP_001158116Link to BLAST:NP_001158116.1
Original member Current member NCBI NM_001164647.1 NP_001158119.1 Accepted alive Link to Nucleotide Sequence:NM_001164647.1Link to Protein Sequence:NP_001158119.1Re-query CCDS DB by Nucleotide ID:NM_001164647Re-query CCDS DB by Protein ID:NP_001158119Link to BLAST:NP_001158119.1
Original member Current member NCBI NM_005411.5 NP_005402.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005411.5Link to Protein Sequence:NP_005402.3Re-query CCDS DB by Nucleotide ID:NM_005411Re-query CCDS DB by Protein ID:NP_005402Link to BLAST:NP_005402.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158116.1 248 Q8IWL2-1 248 100% 0 0
NP_001158119.1 248 Q8IWL2-1 248 100% 0 0
NP_005402.3 248 Q8IWL2-1 248 100% 0 0

Chromosomal Locations for CCDS 44445.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79611826 79611997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79612312 79612431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79613189 79613266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79613737 79614113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTGGCTGTGCCCTCTGGCCCTCAACCTCATCTTGATGGCAGCCTCTGGTGCTGTGTGCGAAGTGAAGG
ACGTTTGTGTTGGAAGCCCTGGTATCCCCGGCACTCCTGGATCCCACGGCCTGCCAGGCAGGGACGGGAG
AGATGGTCTCAAAGGAGACCCTGGCCCTCCAGGCCCCATGGGTCCACCTGGAGAAATGCCATGTCCTCCT
GGAAATGATGGGCTGCCTGGAGCCCCTGGTATCCCTGGAGAGTGTGGAGAGAAGGGGGAGCCTGGCGAGA
GGGGCCCTCCAGGGCTTCCAGCTCATCTAGATGAGGAGCTCCAAGCCACACTCCACGACTTTAGACATCA
AATCCTGCAGACAAGGGGAGCCCTCAGTCTGCAGGGCTCCATAATGACAGTAGGAGAGAAGGTCTTCTCC
AGCAATGGGCAGTCCATCACTTTTGATGCCATTCAGGAGGCATGTGCCAGAGCAGGCGGCCGCATTGCTG
TCCCAAGGAATCCAGAGGAAAATGAGGCCATTGCAAGCTTCGTGAAGAAGTACAACACATATGCCTATGT
AGGCCTGACTGAGGGTCCCAGCCCTGGAGACTTCCGCTACTCAGACGGGACCCCTGTAAACTACACCAAC
TGGTACCGAGGGGAGCCCGCAGGTCGGGGAAAAGAGCAGTGTGTGGAGATGTACACAGATGGGCAGTGGA
ATGACAGGAACTGCCTGTACTCCCGACTGACCATCTGTGAGTTCTGA

Translation (248 aa):
MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGLKGDPGPPGPMGPPGEMPCPP
GNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFS
SNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTN
WYRGEPAGRGKEQCVEMYTDGQWNDRNCLYSRLTICEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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