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Report for CCDS9686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9686.1 Public Homo sapiens 14 LRR1 24 110 108 CCDS HistoryNCBI Gene:122769Re-query CCDS DB by CCDS ID:9686.1Re-query CCDS DB by GeneID:122769See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298288.11 ENSP00000298288.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298288.11Link to Ensembl Protein Viewer:ENSP00000298288.6Re-query CCDS DB by Nucleotide ID:ENST00000298288Re-query CCDS DB by Protein ID:ENSP00000298288
Original member Current member NCBI NM_152329.4 NP_689542.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152329.4Link to Protein Sequence:NP_689542.2Re-query CCDS DB by Nucleotide ID:NM_152329Re-query CCDS DB by Protein ID:NP_689542Link to BLAST:NP_689542.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689542.2 414 Q96L50-1 414 100% 0 0

Chromosomal Locations for CCDS 9686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 49599021 49599203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49602370 49602468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49607400 49608121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 49614256 49614496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGAAGCTACACTGTGAGGTGGAGGTGATCAGCCGGCACTTGCCCGCCTTGGGGCTTAGGAACCGGGGCA
AGGGCGTCCGAGCCGTGTTGAGCCTCTGTCAGCAGACTTCCAGGAGTCAGCCGCCGGTCCGAGCCTTCCT
GCTCATCTCCACCCTGAAGGACAAGCGCGGGACCCGCTATGAGCTAAGGGAGAACATTGAGCAATTCTTC
ACCAAATTTGTAGATGAGGGGAAAGCCACTGTTCGGTTAAAGGAGCCTCCTGTGGATATCTGTCTAAGTA
AGGCCATTTCCAGCAGTTTAAAAGGTTTCCTTTCAGCTATGAGACTGGCTCATAGAGGCTGTAATGTTGA
TACACCAGTTTCAACGCTCACACCAGTGAAGACTTCAGAATTTGAAAACTTTAAAACTAAAATGGTTATC
ACATCCAAAAAAGACTATCCTCTAAGTAAGAATTTTCCATATTCCTTGGAACATCTTCAGACTTCTTACT
GTGGGCTTGTCCGAGTTGATATGCGTATGCTTTGCTTAAAAAGCCTTAGGAAATTAGACTTGAGTCACAA
CCATATAAAAAAGCTTCCAGCTACAATTGGAGACCTCATACACCTTCAAGAACTTAACCTGAATGACAAT
CACTTGGAGTCATTTAGTGTAGCCTTGTGTCATTCTACACTCCAGAAGTCACTTCGGAGTTTGGACCTCA
GCAAGAACAAAATCAAGGCACTCCCTGTGCAGTTTTGCCAGCTCCAGGAACTTAAGAATTTAAAACTTGA
CGATAATGAATTGATTCAATTTCCTTGCAAGATAGGACAACTAATAAACCTTCGCTTTTTGTCAGCAGCT
CGAAATAAGCTTCCATTTTTGCCTAGTGAATTTAGAAATTTATCCCTTGAATACTTGGATCTTTTTGGAA
ATACTTTTGAACAACCAAAAGTCCTTCCAGTAATAAAGCTGCAAGCACCATTAACTTTATTGGAATCTTC
TGCACGAACCATATTACATAATAGGATTCCATATGGCTCTCATATCATTCCATTCCATCTCTGCCAAGAT
TTGGATACCGCAAAAATTTGTGTTTGTGGAAGATTCTGTCTGAACTCTTTCATTCAAGGAACTACTACCA
TGAATCTGCATTCTGTTGCCCACACTGTGGTCTTAGTAGATAATTTGGGTGGTACTGAAGCACCTATTAT
CTCTTATTTCTGTTCTCTAGGCTGTTATGTTAATTCCTCTGATATGTTAAAGTAA

Translation (414 aa):
MKLHCEVEVISRHLPALGLRNRGKGVRAVLSLCQQTSRSQPPVRAFLLISTLKDKRGTRYELRENIEQFF
TKFVDEGKATVRLKEPPVDICLSKAISSSLKGFLSAMRLAHRGCNVDTPVSTLTPVKTSEFENFKTKMVI
TSKKDYPLSKNFPYSLEHLQTSYCGLVRVDMRMLCLKSLRKLDLSHNHIKKLPATIGDLIHLQELNLNDN
HLESFSVALCHSTLQKSLRSLDLSKNKIKALPVQFCQLQELKNLKLDDNELIQFPCKIGQLINLRFLSAA
RNKLPFLPSEFRNLSLEYLDLFGNTFEQPKVLPVIKLQAPLTLLESSARTILHNRIPYGSHIIPFHLCQD
LDTAKICVCGRFCLNSFIQGTTTMNLHSVAHTVVLVDNLGGTEAPIISYFCSLGCYVNSSDMLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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