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Report for CCDS54211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54211.1 Public Homo sapiens 19 ZNF414 24 110 108 CCDS HistoryNCBI Gene:84330Re-query CCDS DB by CCDS ID:54211.1Re-query CCDS DB by GeneID:84330See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393927.9 ENSP00000377504.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393927.9Link to Ensembl Protein Viewer:ENSP00000377504.3Re-query CCDS DB by Nucleotide ID:ENST00000393927Re-query CCDS DB by Protein ID:ENSP00000377504
Original member Current member NCBI NM_001146175.2 NP_001139647.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146175.2Link to Protein Sequence:NP_001139647.1Re-query CCDS DB by Nucleotide ID:NM_001146175Re-query CCDS DB by Protein ID:NP_001139647Link to BLAST:NP_001139647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139647.1 390 Q96IQ9-2 390 100% 0 0

Chromosomal Locations for CCDS 54211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8510691 8510764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8510851 8511024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8511486 8511536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8511617 8511960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8512387 8512492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8512604 8512711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8513029 8513341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8514044 8514046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGAGGAGAAACCCTCAGGGCCCATCCCAGACATGCTGGCCACTGCAGAGCCCAGCTCCAGTGAGACCG
ACAAGGAGGTGTTGTCCCCGGCTGTGCCAGCTGCAGCCCCTTCCTCCTCCATGTCGGAGGAGCCAGGCCC
TGAGCAGGCAGCCACACCGCCAGTGTGGGAACGTGGAGGGGCTGGAGGGATGCAGCAGGGCTCCTCCCCA
GCCCCAGACAGCTGCCAGCCTGGCCCCGGACCCAGCCCTGGCCTGACCAGCATAGTCTCCGGGACCAGCG
AGGACCTGCGGCCTCCCAGACGACGCCCACCTCCAGGGAAGCAAATCCCTTGCTCCAGCCCTGGCTGCTG
CCTCAGTTTTCCCAGCGTCCGTGACCTGGCACAGCATCTGCGAACCCACTGCCCGCCCACACAGTCCCTG
GAAGGCAAGCTCTTCCGCTGCTCAGCCCTGAGCTGCACCGAGACCTTCCCCAGCATGCAGGAGCTGGTGG
CTCACAGCAAACTGCACTACAAACCCAATCGCTACTTCAAGTGTGAGAACTGCCTCCTGCGCTTCCGCAC
GCACCGCTCGCTCTTCAAGCACCTGCATGTTTGCGCGGAGCATGCGCAGAGCCCAGCCCCGCCGCCACCC
CCGGCCCTGGACCGAGAGCCGCCCGCGCCGGAGCGCCCCCCGGAGGTTGACCCCGCATCAGCGCCGGGCC
TGCCGTTCCCGCTGCTGGAACCCTTCACGACCCCCGCCCCTGCCCCCACCGGACCGTTCCTGCCCTACTT
GAACCCTGCGCCCTTTGGCCTAAGCCCCCCGCGCCTGCGCCCCTTCCTGGCCGCTGCACCCGGGCCGCCG
GCTTCCAGCGCCGCCGTCTGGAAAAAGAGCCAAGGTGCTGGCAGCAGCCCCCGAAGACCCCAGGGCGGCT
CCGACGCGCCCTCAGGGCACGCGGCCCCGAGCCGCATCGTGTGGGAGCACACACGCGGCCGCTACTCGTG
CATGCAGTGCGCCTTCTCCACGGCCTCGCGGCCCGCCATGACCCTGCACCTGGAGGACCACCGCCCCGGC
GCCCCCGCGGCCCCCGCGGCCGGGCCGCCGCGCCCCGACGCCCCCGCGGATCCGGCCCCGCTTGCACCCA
AGGTGTCGCCGCTGCTGTCAGAGGGGGAGCTTCCAGTGTTCTCGCAGCTCTGA

Translation (390 aa):
MEEKPSGPIPDMLATAEPSSSETDKEVLSPAVPAAAPSSSMSEEPGPEQAATPPVWERGGAGGMQQGSSP
APDSCQPGPGPSPGLTSIVSGTSEDLRPPRRRPPPGKQIPCSSPGCCLSFPSVRDLAQHLRTHCPPTQSL
EGKLFRCSALSCTETFPSMQELVAHSKLHYKPNRYFKCENCLLRFRTHRSLFKHLHVCAEHAQSPAPPPP
PALDREPPAPERPPEVDPASAPGLPFPLLEPFTTPAPAPTGPFLPYLNPAPFGLSPPRLRPFLAAAPGPP
ASSAAVWKKSQGAGSSPRRPQGGSDAPSGHAAPSRIVWEHTRGRYSCMQCAFSTASRPAMTLHLEDHRPG
APAAPAAGPPRPDAPADPAPLAPKVSPLLSEGELPVFSQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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