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Report for CCDS82425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82425.1 Public Homo sapiens 2 EFR3B 24 110 108 CCDS HistoryNCBI Gene:22979Re-query CCDS DB by CCDS ID:82425.1Re-query CCDS DB by GeneID:22979See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402191.5 ENSP00000385832.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402191.5Link to Ensembl Protein Viewer:ENSP00000385832.1Re-query CCDS DB by Nucleotide ID:ENST00000402191Re-query CCDS DB by Protein ID:ENSP00000385832
Original member Current member NCBI NM_001319099.2 NP_001306028.1 Accepted alive Link to Nucleotide Sequence:NM_001319099.2Link to Protein Sequence:NP_001306028.1Re-query CCDS DB by Nucleotide ID:NM_001319099Re-query CCDS DB by Protein ID:NP_001306028Link to BLAST:NP_001306028.1

Chromosomal Locations for CCDS 82425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25093024 25093130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25103637 25103787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25121673 25121794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25128183 25128332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25129975 25130109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25130552 25130630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25131368 25131503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25131750 25131911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25132903 25133014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25133383 25133434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25135467 25135639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25136523 25136598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25137341 25137502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25139059 25139190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25141366 25141433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25143735 25143862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25144960 25145051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25149694 25149742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25151914 25152020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25153712 25153761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25154235 25154340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGGAGAAGCTGACCTTCTATGCCCTCTCAGCTCCAGAAAAACTTGATCGTATTGGCGCCTACCTCTCTG
AGAGGCTCATCCGTGACGTGGGTCGCCATCGATATGGGTACGTGTGCATTGCTATGGAGGCTTTGGACCA
GCTGCTCATGGCCTGCCACTGCCAGAGCATCAACCTCTTCGTGGAGAGCTTCCTCAAGATGGTGGCCAAG
CTGCTGGAGTCAGAGAAACCCAACCTGCAGATCCTCGGCACCAACTCGTTTGTGAAGTTTGCCAACATCG
AGGAGGACACCCCGTCCTATCACCGGAGCTATGACTTCTTTGTGTCCCGATTCAGTGAAATGTGCCACTC
GAGCCATGATGACTTAGAAATCAAGACCAAAATTCGAATGTCAGGCATCAAAGGCCTGCAAGGGGTGGTG
AGGAAGACGGTGAATGATGAACTGCAGGCCAATATCTGGGACCCACAGCACATGGATAAGATCGTTCCAT
CACTGCTTTTCAATCTACAGCATGTAGAGGAGGCAGAGAGCCGGTCTCCCTCACCCCTCCAAGCACCTGA
GAAGGAGAAAGAGAGCCCCGCGGAGCTGGCTGAGAGGTGTCTTCGGGAGCTGCTGGGCCGGGCTGCCTTT
GGCAACATCAAAAACGCCATCAAGCCTGTTCTCATCCATCTGGATAACCATTCTCTTTGGGAACCCAAGG
TGTTTGCCATCCGTTGCTTTAAAATCATCATGTACTCAATTCAGCCGCAGCACTCACACCTGGTCATCCA
GCAGCTCCTGGGCCACCTGGACGCCAACAGCCGCAGCGCTGCGACGGTGCGCGCGGGCATCGTGGAAGTC
TTGTCGGAAGCCGCGGTCATCGCTGCCACCGGCTCTGTGGGGCCCACAGTACTGGAGATGTTCAACACGC
TGCTGAGGCAGCTGCGGCTCAGCATCGACTACGCGCTGACCGGGAGCTACGACGGGGCGGTCAGCCTCGG
CACCAAGATCATCAAGGAGCACGAGGAGCGCATGTTCCAGGAGGCCGTCATCAAGACCGTGGGCTCCTTT
GCCAGCACGCTGCCCACCTACCAGCGCTCCGAGGTGATCCTCTTCATCATGAGCAAGGTCCCGCGGCCAT
CCCTGCACCAGGCGGTGGACACAGGCAGGACGGGGGAGAATAGGAACCGTCTGACCCAGATTATGCTGCT
AAAATCCCTCCTGCAGGTATCCACAGGTTTCCAGTGCAACAACATGATGTCAGCCCTGCCTAGCAACTTC
CTGGACCGCCTTCTCTCCACCGCCCTCATGGAGGATGCAGAAATTCGACTCTTTGTTCTAGAGATTCTCA
TCAGTTTCATTGATCGTCATGGCAACCGCCACAAGTTCTCTACCATCAGTACCCTCAGTGACATCTCTGT
CCTGAAGCTGAAAGTGGACAAGTGCTCTCGACAGGACACCGTCTTCATGAAGAAGCACTCCCAGCAGCTC
TACAGACACATCTACCTGAGCTGCAAGGAGGAAACAAACGTGCAGAAACACTACGAGGCGCTCTATGGCT
TGCTGGCCCTCATCAGCATCGAGCTGGCTAACGAGGAGGTGGTGGTGGACCTCATCCGTCTGGTGCTGGC
TGTTCAGGACGTGGCCCAAGTCAATGAGGAGAACTTGCCTGTCTACAACCGCTGTGCCCTCTATGCTCTG
GGCGCAGCCTACCTGAACCTCATCAGTCAGCTCACAACAGTGCCTGCCTTCTGCCAGCACATCCATGAGG
TGATAGAGACCAGGAAGAAAGAGGCTCCATACATGCTCCCCGAGGATGTGTTTGTGGAGAGGCCCAGGCT
GTCTCAGAATCTTGATGGGGTGGTCATTGAGCTCCTCTTCCGCCAGAGCAAGATCAGTGAAGTCCTGGGA
GGCAGTGGCTACAACTCGGACCGGCTCTGCCTGCCCTACATTCCTCAGCTGACAGATGAGGATCGTTTAT
CCAAGAGGAGGAGCATTGGAGAGACCATCTCCCTGCAGGTGGAGGTAGAATCGAGGAACAGTCCGGAGAA
GGAGGAGCGAGTGCCTGCCGAGGAGATCACCTATGAGACACTGAAGAAAGCCATTGTGGACAGCGTAGCA
GTGGAGGAGCAGGAGCGTGAGCGGCGGCGGCAGGTGGTGGAGAAGTTCCAGAAGGCACCCTTCGAGGAGA
TTGCTGCACACTGCGGGGCCCGGGCATCGCTGCTCCAGAGCAAACTCAATCAGATCTTTGAAATCACCAT
CCGGCCCCCACCAAGCCCATCAGGAACCATCACTGCAGCCTACGGTCAGCCGCAGAACCACTCCATCCCC
GTCTATGAAATGAAGTTTCCCGATCTGTGTGTATACTGA

Translation (782 aa):
MEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAK
LLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVV
RKTVNDELQANIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKEKESPAELAERCLRELLGRAAF
GNIKNAIKPVLIHLDNHSLWEPKVFAIRCFKIIMYSIQPQHSHLVIQQLLGHLDANSRSAATVRAGIVEV
LSEAAVIAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGTKIIKEHEERMFQEAVIKTVGSF
ASTLPTYQRSEVILFIMSKVPRPSLHQAVDTGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNF
LDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLSDISVLKLKVDKCSRQDTVFMKKHSQQL
YRHIYLSCKEETNVQKHYEALYGLLALISIELANEEVVVDLIRLVLAVQDVAQVNEENLPVYNRCALYAL
GAAYLNLISQLTTVPAFCQHIHEVIETRKKEAPYMLPEDVFVERPRLSQNLDGVVIELLFRQSKISEVLG
GSGYNSDRLCLPYIPQLTDEDRLSKRRSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVA
VEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTITAAYGQPQNHSIP
VYEMKFPDLCVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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