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Report for CCDS42919.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
42919.2 |
Public |
Homo sapiens |
21 |
EPCIP |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:56245](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:42919.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:56245](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 21 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 42919.1 |
The coding region has been updated to correct an indel in the CDS, which results in a shorter protein C-terminus that is better supported by transcript and conservation data. |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 42919.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000487113.1 |
ENSP00000418511.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000487113.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000418511.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000487113](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000418511](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000479548.2 |
ENSP00000418653.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000479548.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000418653.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000479548](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000418653](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000490358.5 |
ENSP00000418830.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000490358.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000418830.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000490358](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000418830](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001162495.3 |
NP_001155967.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001162495.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001155967.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001162495](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001155967](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001155967.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001162496.3 |
NP_001155968.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001162496.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001155968.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001162496](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001155968](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001155968.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_019596.6 |
NP_062542.5 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_019596.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_062542.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_019596](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_062542](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_062542.5](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 42919.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (660 nt): ATGGCACCACCTTCCAGGCACTGTCTTCTTCTGATCAGCACTCTGGGTGTCTTTGCACTTAACTGCTTCA CCAAAGGTCAGAAGAACAGCACGCTCATCTTCACAAGGGAAAACACCATTCGGAACTGCAGCTGTTCTGC GGACATCCGGGATTGTGACTACAGTTTGGCCAACCTGATGTGCAACTGTAAAACCGTCCTGCCCCTTGCA GTAGAGCGAACCAGCTACAATGGCCATCTGACCATCTGGTTCACGGACACATCTGCGCTGGGCCACCTGC TGAACTTCACGCTGGTCCAAGACCTGAAGCTTTCCCTGTGCAGCACCAACACTCTCCCCACTGAATACCT GGCTATTTGTGGTCTGAAGAGGCTGCGCATCAACATGGAGGCCAAGCATCCCTTCCCAGAGCAGAGCTTA CTCATCCATAGCGGTGGGGACAGTGACTCCAGAGAGAAGCCCATGTGGTTACACAAAGGCTGGCAGCCAT GTATGTATATCTCATTCTTAGATATGGCTCTTTTCAACAGGGACTCAGCCTTAAAATCATATAGTATTGA AAACGTTACCAGCATTGCCAACAACTTTCCTGACTTTTCTTACTTTAGAACCTTCCCAATGCCAAGCAAC AAAAGCTATGTTGTCACATTTATTTACTAG
Translation (219 aa): MAPPSRHCLLLISTLGVFALNCFTKGQKNSTLIFTRENTIRNCSCSADIRDCDYSLANLMCNCKTVLPLA VERTSYNGHLTIWFTDTSALGHLLNFTLVQDLKLSLCSTNTLPTEYLAICGLKRLRINMEAKHPFPEQSL LIHSGGDSDSREKPMWLHKGWQPCMYISFLDMALFNRDSALKSYSIENVTSIANNFPDFSYFRTFPMPSN KSYVVTFIY
|